Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0991
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe...    26   4.9  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   4.9  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   6.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   8.6  

>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 380 FTFINVRISNTLMSVTVYLSIREYCAVR 297
           FT++N  + +T+  + ++ S R  C +R
Sbjct: 313 FTYLNQALESTISPIVIFASNRGICTIR 340


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +1

Query: 508 VLQFLNENWRVVTEEFGQPVVDYA---LNV-----TVNTAKKFFDAVPYDE 636
           ++ FL EN  ++ E+F +  VD     LN      +VNTA +FF A+ Y E
Sbjct: 730 LVSFLLENSALLLEKFEEEDVDSTNCNLNTMEALASVNTALQFFSALNYSE 780


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +1

Query: 511 LQFLNENWRVVTEEFG-QPVVDYALNVTVNTAKKFFDAVPYDELLNVPI 654
           L+F +    V+ E+   + V+  +L   V T  K  D +P D++++VP+
Sbjct: 536 LEFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPV 584


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 238 AHSPPDIKCLLEPIDIYNVNAPPTLR 161
           A  PP IK    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 137 YTETLELISQG-GWRIYVVDVYGLQ*TLNIRWAVSSTTHISNKKKIKENIL 286
           Y   LE  ++G GWR+YV+  Y  + TL        T  +   +    NIL
Sbjct: 309 YEYQLERETRGYGWRLYVLQEYSPKFTLFSLLQTVLTLDVETVRAFSNNIL 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,857
Number of Sequences: 5004
Number of extensions: 54400
Number of successful extensions: 112
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)