Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0989
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    66   5e-12
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    61   1e-10
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    52   8e-08
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    38   0.002
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po...    36   0.007
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    32   0.090
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    28   1.5  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    27   1.9  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    27   2.6  
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    27   3.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.4  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   3.4  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    26   4.5  
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c...    26   4.5  
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||...    26   4.5  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    26   5.9  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    26   5.9  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   7.9  

>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 66.1 bits (154), Expect = 5e-12
 Identities = 27/47 (57%), Positives = 39/47 (82%)
 Frame = +1

Query: 529 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLY 669
           Y+GFA+LP Q HR+ V++GF+F ++V+GESG GKSTL+N+L   D+Y
Sbjct: 75  YVGFASLPNQWHRRCVRQGFNFNVLVLGESGSGKSTLVNTLLNRDVY 121


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 61.3 bits (142), Expect = 1e-10
 Identities = 26/51 (50%), Positives = 38/51 (74%)
 Frame = +1

Query: 526 DYIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNR 678
           +Y+GF ++  Q++RK ++RGF F +MVVG SG GKSTLIN+LF   L  ++
Sbjct: 11  NYVGFDSITSQINRKLIRRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSK 61


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 23/45 (51%), Positives = 31/45 (68%)
 Frame = +1

Query: 520 ERDYIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLF 654
           E +++G A LP Q H+   + G  FTLM+ GESGLGK+T  N+LF
Sbjct: 5   ETNFVGIADLPNQRHKIVSRNGVAFTLMLCGESGLGKTTFCNTLF 49


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 532 IGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINS 648
           IG      Q + +  + G D  L+VVGES LGK+T +NS
Sbjct: 99  IGINDFNHQHYSRVCRNGIDINLIVVGESSLGKTTFVNS 137


>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 15/29 (51%), Positives = 21/29 (72%)
 Frame = +1

Query: 565 RKSVKRGFDFTLMVVGESGLGKSTLINSL 651
           +KS K+G    LMVVG+ GLG++  IN+L
Sbjct: 44  KKSSKKGIPLNLMVVGDVGLGRTAFINTL 72


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +1

Query: 544 TLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRKFQ 687
           +LP +      ++    T+M+ G SG GK+T  N+LF   L   + ++
Sbjct: 15  SLPSKRENLIKRKECGLTIMLCGASGTGKTTFFNTLFATSLQPEKSYE 62


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 529 YIGFATLPEQVHRKSVKRGFDFTLMVVGE-SGLGKSTLINSLFLGDLYKNRKFQ 687
           +IG     + VHR +  RG+   L +V E  G G +T +    L D+ KNR  Q
Sbjct: 52  FIGAVICKQDVHRGTTLRGYIAMLAIVKEYRGQGIATKLTQASL-DVMKNRGAQ 104


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 583 GFDFTLM-VVGESGLGKSTLINSLF 654
           GF++ ++ V+G    GKSTL+N+LF
Sbjct: 36  GFNYHVVAVLGSQSTGKSTLLNNLF 60


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/26 (50%), Positives = 21/26 (80%)
 Frame = +1

Query: 601 MVVGESGLGKSTLINSLFLGDLYKNR 678
           +V+G +G GKS+LI++L LG+L  N+
Sbjct: 645 IVIGPTGSGKSSLISAL-LGELSLNK 669


>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +1

Query: 598 LMVVGESGLGKSTLINSLFLGDLYKNRKF 684
           ++++GESG+GK++++N       Y NRKF
Sbjct: 11  VIILGESGVGKTSIMNQ------YVNRKF 33


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/26 (61%), Positives = 20/26 (76%)
 Frame = +1

Query: 592 FTLMVVGESGLGKSTLINSLFLGDLY 669
           FTL VVG +G GKSTL  +L LG+L+
Sbjct: 609 FTL-VVGSTGSGKSTLAMAL-LGELH 632


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 635 VDFPRPDSPTTMRVKSKPLFTDLRCTCSG 549
           V  P P  PT +R+  K   T + C+CSG
Sbjct: 250 VPIPFPAGPTIIRMHPKLSTTAVVCSCSG 278


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 589 DFTLMVVGESGLGKSTLIN 645
           D  + +VG++G GKSTL+N
Sbjct: 416 DSRVAIVGKNGTGKSTLLN 434


>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 83  PKFFY-CFLINYTFLELA 133
           P+FFY CFL N TFL  A
Sbjct: 171 PRFFYTCFLCNSTFLASA 188


>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 592 FTLMVVGESGLGKSTLINSLFLGDLY 669
           F L+++G+SG+GKS L+   F  D Y
Sbjct: 9   FKLLLIGDSGVGKSCLL-LRFADDTY 33


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 592 FTLMVVGESGLGKSTLINSLFLGDLYK 672
           F L++VG+ G GK+T +     G+  K
Sbjct: 10  FKLVLVGDGGTGKTTFVKRHLTGEFEK 36


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 7/20 (35%), Positives = 17/20 (85%)
 Frame = +1

Query: 601 MVVGESGLGKSTLINSLFLG 660
           +++G +G GKST+++++ +G
Sbjct: 37  LIIGPNGTGKSTIVSAICIG 56


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 604 VVGESGLGKSTLINSL 651
           ++GESG GK+TL+N L
Sbjct: 916 LMGESGAGKTTLLNVL 931


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,641
Number of Sequences: 5004
Number of extensions: 47325
Number of successful extensions: 178
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)