Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0989
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)               93   3e-19
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)                     84   9e-17
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)            72   5e-13
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)               31   0.67 
SB_27557| Best HMM Match : Ras (HMM E-Value=0)                         29   4.7  
SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)              28   6.2  
SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   8.3  
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)              28   8.3  
SB_4971| Best HMM Match : Ras (HMM E-Value=0)                          28   8.3  

>SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)
          Length = 101

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 42/52 (80%), Positives = 48/52 (92%)
 Frame = +1

Query: 526 DYIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKNRK 681
           +Y+GFA LP QVHRKSVK+GF+FTLMVVGESGLGKSTLI+SLFL DLY +RK
Sbjct: 3   NYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLIDSLFLTDLYSDRK 54


>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
          Length = 384

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 38/47 (80%), Positives = 43/47 (91%)
 Frame = +1

Query: 529 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLY 669
           Y+GFA LP QV RKSVK+GF+FT+MVVGESGLGKSTL+NSLFL DLY
Sbjct: 4   YVGFANLPNQVFRKSVKKGFEFTVMVVGESGLGKSTLLNSLFLTDLY 50


>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
          Length = 275

 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 31/46 (67%), Positives = 39/46 (84%)
 Frame = +1

Query: 529 YIGFATLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDL 666
           Y+GF T+ EQ+ RKS+KRGF+F LMVVG SGLGKST++N+LF G L
Sbjct: 94  YVGFDTVQEQIRRKSLKRGFEFNLMVVGASGLGKSTMVNTLFKGKL 139


>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
          Length = 704

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 493 KMTMERDRGERDYIGFATLPE---QVHRKSVKRGFDFTLMVVGESGLGKSTLINSL 651
           K T+ R R  R  I    +P+   ++  +     ++F  +++G SG+GKS L+N L
Sbjct: 316 KPTLVRPRASRQ-ITTCEIPDVDFEIISRQPNWDYEFKTLIIGNSGVGKSCLVNKL 370


>SB_27557| Best HMM Match : Ras (HMM E-Value=0)
          Length = 184

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 565 RKSVKRGFDFTLMVVGESGLGKSTLINSLFLGDLYKN 675
           R   K  + F ++++G+S +GKS+L+     G  ++N
Sbjct: 5   RMKPKYFYQFRIILIGDSTVGKSSLLRQFTEGQFFEN 41


>SB_10158| Best HMM Match : MMR_HSR1 (HMM E-Value=9.4e-08)
          Length = 340

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +1

Query: 592 FTLMVVGESGLGKSTLINSL 651
           F ++VVG +G+GKS L+N+L
Sbjct: 61  FKVIVVGRTGVGKSHLVNTL 80


>SB_35301| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 618

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +1

Query: 544 TLPEQVHRKSVKRGFDFTLMVVGESGLGKSTLINSLF 654
           +LPE +H  +        + VVG +G GKS+L+++LF
Sbjct: 47  SLPEVLHNVTCVIKPSEKVGVVGRTGAGKSSLLSTLF 83


>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
          Length = 957

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
 Frame = +1

Query: 403 KNYIEIFNSLSPKIYQYEII*LRL*LKESGKMTMERDRGERDYIGFATLPEQVHRKSVKR 582
           K + + F S S KI QY     R  L+++ K+     +  +D +    +   +  +  ++
Sbjct: 30  KTFEKQFRSFSSKI-QY----FRNCLEDAQKIISSLQKAYKDDMNSDVINAFISEQETQK 84

Query: 583 GFDFT-----LMVVGESGLGKSTLINSLFLGDLY 669
             +F      ++VVG++  GKS+LIN L LG  Y
Sbjct: 85  FEEFVSKKAAILVVGQTNSGKSSLINEL-LGGTY 117


>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 209

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 592 FTLMVVGESGLGKSTLINSLFLGDLYKN 675
           F L+++G+SG+GKS+L+   F  D + N
Sbjct: 9   FKLLLIGDSGVGKSSLL-LRFADDTFSN 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,920,632
Number of Sequences: 59808
Number of extensions: 315187
Number of successful extensions: 736
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)