Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0988
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37160.1 68417.m05261 multi-copper oxidase type I family prot...    29   3.4  
At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repe...    28   7.7  

>At4g37160.1 68417.m05261 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase
          Length = 541

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +3

Query: 558 YSFRLRGLVRVPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTPW* 737
           Y F+L+  +   Y YF+S      SG F  L  +++  +V   P P  + D  L V+ W 
Sbjct: 116 YQFQLKDQIGT-YTYFASTSLHRASGAFGAL--NINQRSVITTPYPTPDGDFTLLVSDWF 172

Query: 738 SQNYHR 755
           S   H+
Sbjct: 173 SNMTHK 178


>At4g00800.1 68417.m00110 expressed protein contains 1 WD-40 repeat
           (PF00400); 42% similarity to fimbriae-associated protein
           Fap1 (gi:3929312) [Streptococcus parasanguinis]
          Length = 994

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 630 SG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTPW 734
           +G   +L+P+L+V A  Q P PE   +  +P T W
Sbjct: 646 TGLVVKLIPNLEVYA--QLPRPEGVREGSMPYTAW 678


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,979,046
Number of Sequences: 28952
Number of extensions: 337048
Number of successful extensions: 824
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)