Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0985
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0338 + 16916429-16916650,16916728-16917900                       32   0.40 
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515           29   2.1  
09_02_0082 - 4060018-4061604                                           29   3.7  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   3.7  

>10_08_0338 + 16916429-16916650,16916728-16917900
          Length = 464

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  AQASTSHGAWSPGYGGYASDAHYG 91
           A A T +G+   GYGGY  DA YG
Sbjct: 362 AGAGTGYGSQGYGYGGYGGDASYG 385


>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
          Length = 916

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 50  SPGYGGYASDAHYGAPAAG 106
           S GYGGY +D H+G   +G
Sbjct: 33  SSGYGGYGTDIHFGGGGSG 51


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 252 PTHPSRTPQLPSPTVPVTLLVTANGLVP 335
           P  P  TP +PSPTVP   +  A    P
Sbjct: 425 PAPPVPTPSMPSPTVPAPPVTAAPATAP 452


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +3

Query: 252 PTHPSRTPQLPSPTVPVTLL 311
           PT P   PQ PSPT P +LL
Sbjct: 121 PTAPPPRPQAPSPTAPPSLL 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,577
Number of Sequences: 37544
Number of extensions: 156213
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)