Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0984
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces p...    28   1.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    28   1.5  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    27   1.9  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    27   3.4  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    26   5.9  

>SPAP27G11.08c |meu32|mug11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/38 (28%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
 Frame = +3

Query: 162 KKYDIKHLI-ISTTKFGFVFQGKLINLRSQMDKTDKKC 272
           K Y+ K +  + T+ F + F+GK++NL+++   +++ C
Sbjct: 12  KLYEFKKINELGTSTFRYYFKGKIVNLKNKRVSSNEVC 49


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
 Frame = +3

Query: 279 NGLTKPITTLEWAKDITAIDLSNKGISELTHNY-TLPEXXXXXXXXXXXXKEVPSEVLKL 455
           N +T P+   E ++ +  ++ S+  +S+++    +L +              +P E+  L
Sbjct: 536 NFVTFPLIITELSQ-LETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLL 594

Query: 456 TKLKTFNVSHNSITYFDDAPDFCNTIEQLNISNNAL 563
             L+T ++S+N+IT      + C  +  +N++ N L
Sbjct: 595 KNLETIDLSYNAITNIASLSE-CPKLNSINVACNLL 629


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +3

Query: 222 GKLINLRSQMDKTDKKCKKNGLTKPITTLEWAKDITAIDLSNKGISELTHNY 377
           G + NL + +D+   K   +G   P+T L  +KDI     +   +  +TH+Y
Sbjct: 148 GCITNLAT-LDENKSKIAHSGALGPLTRLAKSKDIRVQRNATGALLNMTHSY 198


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -1

Query: 466 FNFVSFKTSLGTSLRLLFDKSKSYKFSGSV*LCVNSLIPLLLKSIAVISLAHSRVVIGFV 287
           FN +S K+ +  SL+ LF  S SY    S  L   ++    LK     + +HS +    +
Sbjct: 166 FNALSEKSVIPKSLKSLFKSSVSYINQSSKLLAPGTINIKRLKDANFQAPSHSGIRCMSI 225

Query: 286 RPFF 275
            P+F
Sbjct: 226 HPYF 229


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 INLRSQMDKTDKKCKKNGLTKPITTLE 311
           + LR   D+T+KKC K  L K  + LE
Sbjct: 44  LRLRKSSDQTEKKCWKEKLMKIRSELE 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,787
Number of Sequences: 5004
Number of extensions: 50392
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)