Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0983
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ... 58 7e-10
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 42 7e-05
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 37 0.002
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 29 0.69
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 28 1.2
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 27 2.8
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 3.7
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy... 26 4.8
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 26 4.8
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 6.4
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 8.5
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 8.5
>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 426
Score = 58.4 bits (135), Expect = 7e-10
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Frame = +1
Query: 214 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 393
+++ AGSRY+P A G+SH+L A TT+ S+ I R+ +G +S RE I
Sbjct: 45 LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHII 102
Query: 394 YTLEATQDKLNDALEILNNLISNQEFRPWELNDNA---PRLKYDIISLPPQIRAVDLLHK 564
T + L +L ++ +F P++L + R++ ++ A+ LH+
Sbjct: 103 LTARFLNEYLEYYARLLAEVVDATKFLPFQLTEEVLPTARIESELFREDILRVAMAKLHE 162
Query: 565 AAYRRGLGNSL 597
A+ RG+GN +
Sbjct: 163 KAFHRGIGNEV 173
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 41.9 bits (94), Expect = 7e-05
Identities = 24/83 (28%), Positives = 42/83 (50%)
Frame = +1
Query: 214 VTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIY 393
V + AGSR E G +H L A TKN S ++ + GA+++A RE
Sbjct: 46 VLVGVDAGSRAETAKNNGAAHFLEHLAFKGTKNRSQKALELEFENTGAHLNAYTSREQTV 105
Query: 394 YTLEATQDKLNDALEILNNLISN 462
Y A ++ + +A+ +L ++++N
Sbjct: 106 YYAHAFKNAVPNAVAVLADILTN 128
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 37.1 bits (82), Expect = 0.002
Identities = 31/126 (24%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Frame = +1
Query: 229 KAGSRYEPQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEA 408
KAGSRYE + G+SH + A T+ ++ KL +G S RE + Y
Sbjct: 74 KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIYQAAV 133
Query: 409 TQDKLNDALEILNNLISNQEFRPWELNDNAPRLKYDIISL--PPQIRAVDLLHKAAYRRG 582
D + ++L + + + +L + Y+ L P + H A++
Sbjct: 134 FNDDVKSMSKLLAETVLAPKIQEDDLVHYRDSIIYENSELWTKPDALLGEFAHVTAFQNN 193
Query: 583 -LGNSL 597
LGN L
Sbjct: 194 TLGNCL 199
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 28.7 bits (61), Expect = 0.69
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +1
Query: 136 DVRIQSSVLPNKTFVAA---LDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTT 306
DV+ +S LP + A D+GS +R + + E E+G+ H+LR +
Sbjct: 132 DVKPKSVGLPTNAYFAIDEIEDDGSKSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASV 191
Query: 307 KNISSFLIQRKLSQIG 354
+++ + Q+ S G
Sbjct: 192 GTLATRVTQQAQSLQG 207
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +1
Query: 376 DREFIYYTLEATQDKLNDALEILNNLISNQEFRP 477
+RE YY L+ +KL++ + LN + ++ P
Sbjct: 429 ERELKYYELKRKDEKLDEGIRALNQALHHESIMP 462
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/83 (26%), Positives = 35/83 (42%)
Frame = +1
Query: 124 AVKKDVRIQSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLT 303
A + VR+Q LP+ FV GSP Q +LG + + + G+T
Sbjct: 857 APHRAVRLQIEDLPSNVFVTNRGRGSPA--------------DQYDLGAAQFITAVNGVT 902
Query: 304 TKNISSFLIQRKLSQIGAYVSAS 372
T N+ F+ + + +YV S
Sbjct: 903 TLNLEDFVREIRKIDDNSYVRVS 925
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -1
Query: 266 PNSACGS*REPALKAIVTRVTGEPLSKAATNVLLGKTLDWILTSFFTAGAA 114
PN ACG+ R+ + + T ++ + +A N LDW + S + A+
Sbjct: 202 PNCACGAKRQLEFQILPTLISSMNIDHSAKN-----ALDWGILSIYVCSAS 247
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 262 LGLSHVLRSAAG-LTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTLEATQD 417
L S L S +G T+ N+S+ QR ++ + S + D +YY T D
Sbjct: 79 LSTSSPLISTSGQFTSNNVSTTSSQRHNTKTITFFSGTSDYTSVYYDTTGTDD 131
>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 11 FVALLPKVSKNLRKWHPKLSSPPLFVMLRSGATPKL 118
FVA L V + L +WH KL F ++ PK+
Sbjct: 70 FVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKV 105
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 4.8
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Frame = +1
Query: 250 PQAELGLSHVLRSAAGLTTKNISSFLIQRKLSQIGAYVSASGDR-EFIYYTL-EATQDKL 423
P+AEL H+L G + ++S+F I +++ S R E ++ EA+ +
Sbjct: 19 PRAELWQRHLLEKKEGDQSISVSAFNISSMHNELSGLSEKSRQRVEAVWAAFSEASCSER 78
Query: 424 NDALE-ILNNLISNQEFRPWELNDNAPRLKYDIISLPP 534
AL+ ILNN S+ D+ RL D +SL P
Sbjct: 79 KLALQGILNNCSSSLLSFASSTLDSLVRL--DFLSLLP 114
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 6.4
Identities = 16/62 (25%), Positives = 27/62 (43%)
Frame = +1
Query: 148 QSSVLPNKTFVAALDNGSPVTRVTIAFKAGSRYEPQAELGLSHVLRSAAGLTTKNISSFL 327
Q+ ++ TFV A + RV +FK+ + P A + + LTT + S
Sbjct: 174 QNKLISQPTFVTASHEAQHLLRVQTSFKSSFTFLPSAINTATRSKLPSMRLTTVQVPSRS 233
Query: 328 IQ 333
+Q
Sbjct: 234 VQ 235
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 247 EPQAELGLSHVLRS-AAGLTTKNISSFLIQRKLSQIGAYVSASGDREFIYYTL 402
E + +L H+L + AGL T++ SF+ + ++SQ+ + S D + Y++
Sbjct: 298 EKRQKLERDHMLMAQCAGLMTRSDKSFIARIQISQLMSEDPESDDFYYRVYSI 350
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.0 bits (52), Expect = 8.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 418 KLNDALEILNNLISNQEFRPWELNDNAPR--LKYDIISL 528
KLND EILN ++ + + W N + +K IISL
Sbjct: 833 KLNDENEILNFVLETNDGKRWLSNKKVLKSFVKQKIISL 871
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,221
Number of Sequences: 5004
Number of extensions: 51519
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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