Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0982
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    31   0.17 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   0.68 
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    28   1.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   3.6  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   6.4  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   8.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   8.4  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +3

Query: 27  ELQDKSTKDALGSTEDTTSATHSLVQEAF*IRAQNNVVPLIEDHLEEGF 173
           +L + STKD++  T DTT    +L Q +   +  +NVV L  +H  +GF
Sbjct: 72  KLLNASTKDSITFTRDTTEGL-NLFQRSLKWKPGDNVVILDNEHPNQGF 119


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
 Frame = +2

Query: 341 ESVLAGSNSRELRCGRRLVSGLFSKPRLPLGYTFVATVP-----RGACRINVTELASSEN 505
           +S + G    +   G+ LV   +   R+ +   F+ T+P      G   I  T    +EN
Sbjct: 146 DSSIGGKTGIDTPLGKNLVGAFWQPLRVYVDMVFLHTLPPRQVINGLSEIIKTAAMWNEN 205

Query: 506 YIALRLSNSSYILNGEFAVSAPGMYE 583
              L  +NS+ +L+     S PG Y+
Sbjct: 206 DFQLLENNSAVLLDALNKPSVPGEYK 231


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -1

Query: 421 SRFREQS*NEPSSTSQLPRIAAC*YRLPSDYLTSTLHTNSRESVLSTRGAVVNYGQSRVE 242
           S  ++   N+P  TSQ+P I+A   + P D  T      +  ++LSTR A +  G++   
Sbjct: 59  STIQQSMTNQPEPTSQVPPISA---KPPMDDATYATQQLTLRALLSTREAGIIIGKAGKN 115

Query: 241 LLTHRPT 221
           +   R T
Sbjct: 116 VAELRST 122


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = +1

Query: 376 EMWKKARFRIVLETSTATGLH---FCSDRPKGSMPD 474
           E WK     ++  + T  GL     C D P+G++PD
Sbjct: 620 ESWKNIVMELIKASETIWGLIKDVLCDDSPEGNLPD 655


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 402 PETSLLPHLSSRELLPANTDSRPITLQVP 316
           P  S   ++SSR ++ A TDS+P T   P
Sbjct: 650 PSMSFANNISSRSVISAATDSKPSTRTSP 678


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 700 CSVWVSIKNHNINRMIYGSICMHIVQSSGTGI 605
           C +W  I N N +  I+ S  +H ++ S   +
Sbjct: 7   CLIWYCIDNQNYDNSIFYSERLHAIEDSNESL 38


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 340 PSDYLTSTLHTNSRESVLSTRGAVVNYGQSRVELLTHRPTIQ 215
           P+D  T  L+ N+  +  S+       G +R    THR +I+
Sbjct: 38  PTDSSTRLLYNNASNATFSSAALAAGVGGTRASGYTHRFSIR 79


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 108 PPAQGCVLHSWYLLSTPRHPLLICLVTRT 22
           P +   VLH  +LL  P+H L +  V RT
Sbjct: 213 PNSDAEVLHLAHLLKIPQHELYVTKVLRT 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,279,979
Number of Sequences: 5004
Number of extensions: 72024
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)