Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0982
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42920.1 68416.m04503 hypothetical protein predicted proteins...    30   1.8  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    29   2.4  
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar...    28   5.6  
At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase fam...    28   7.3  
At4g26690.1 68417.m03846 glycerophosphoryl diester phosphodieste...    28   7.3  
At1g27960.1 68414.m03425 expressed protein contains Pfam profile...    27   9.7  

>At3g42920.1 68416.m04503 hypothetical protein predicted proteins,
           Arabidopsis thaliana
          Length = 141

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 543 NIYELFDSLRAI*FSLEANSVTLIRHAPLG 454
           N+Y    +L  I  SLE N + LIR +PLG
Sbjct: 22  NVYNKMKTLHGIIDSLEDNEIQLIRDSPLG 51


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
            transcription factor HUA2, Arabidopsis thaliana,
            EMBL:AF116556
          Length = 1347

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -3

Query: 329  PYKYPAHK*QGVRLEYKGCRRQLWT-ESRRIVD-P*AYNSKHMAHYRQHME 183
            P  +  HK       Y G  R     ++ R  D P AYN++H  HY+QH E
Sbjct: 1281 PRYHDRHKGPHQSSSYSGHHRDSGRLQNNRWSDSPRAYNNRHSYHYKQHSE 1331


>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 390

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
 Frame = -1

Query: 247 VELLTHRPTIQSTWRITVNIWNPCVKPSSKWSSIKGTTLF-CARIQNAS-CTRLCVALVV 74
           V+  +H+  + S +   V+ W P    SS+++ + G TLF    + + S  T L VA VV
Sbjct: 112 VDCKSHKSNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVV 171

Query: 73  ---SSVDPKASFVDLSC 32
              SS+ P  + + LSC
Sbjct: 172 KIDSSIPPSRACL-LSC 187


>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family
            protein similar to iturin A synthetase C [Bacillus
            subtilis] GI:16040972; contains Pfam profile PF00501:
            AMP-binding enzyme
          Length = 1040

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 337  SDYLTSTLHTNSRESVLSTRGAVVNYGQSRVELLTHRPTIQS 212
            S Y+   LH  S E + S R   V     RV +L  RP+I S
Sbjct: 950  SAYIDENLHFESHELLASDRLVTVCSSSGRVHVLRVRPSILS 991


>At4g26690.1 68417.m03846 glycerophosphoryl diester
           phosphodiesterase family protein weak similarity to
           glycerophosphodiester phosphodiesterase [Borrelia
           hermsii] GI:1399038; contains Pfam profile PF03009:
           Glycerophosphoryl diester phosphodiesterase family
          Length = 759

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -1

Query: 328 LTSTLHTNSRESVLSTRGAVVNYGQSRVELLTHRPTIQSTWRITVNIWNPCVKPSSKWSS 149
           LT+  + ++    L + GA+  +  +  E+ T  P I + +R+T    NP  K + K  S
Sbjct: 419 LTAFRNRSTTVPELGSLGAIYTFSLTWAEIQTLTPAISNPYRVTSLFRNPKQKNAGKLFS 478

Query: 148 I 146
           +
Sbjct: 479 L 479


>At1g27960.1 68414.m03425 expressed protein contains Pfam profile
           PF04146: YT521-B-like family
          Length = 539

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -3

Query: 257 TESRRIVDP*AYNSKHMAHYRQHMESMCKTFL*MVFYQRNYIVLRAYSERLLHKAV 90
           TES R       NSK        ++  C+  L   F    + V+++YSE  +HK++
Sbjct: 292 TESNRGPRASRLNSKSKMISYDRVDRFCQQELLSQFRDAKFFVIKSYSEDNVHKSI 347


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,254,748
Number of Sequences: 28952
Number of extensions: 385886
Number of successful extensions: 1051
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)