Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0981
(701 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 28 1.1
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 28 1.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||M... 27 3.4
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 27 3.4
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce... 26 4.5
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.5
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 4.5
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 7.9
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 25 7.9
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Frame = +3
Query: 243 SNMQRQAISQAFT-REYGRDLIEDLKSELGGHFEDVIVALMTPPE--EYLCQELHRCMEG 413
+N++ Q + Q T ++ + + + +G FE+ I L E + L LH +
Sbjct: 753 TNLEDQLVDQTVTINKFAFERDQFRERSMG--FENTIKDLTRKMEATDMLNVSLHESLRS 810
Query: 414 MGTDEDTLVEILCTRTKPEIA---AIVDTYERLYDRPLAEHMCSET-SGDFRRLL 566
+ T+ LV + K E+ AI+D +YD+ A+H ET S D + L
Sbjct: 811 VQTENSELVTEMAL-LKAELVKKQAIIDANANIYDKLTADHTNYETVSADINQNL 864
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 556 AAS*HSLSSGPAQTRRRPT-PSGPASSRRSCTTPGRPSGGPTRRSS 690
+A H ++ P+ T + PT PS PA S +S RPS + SS
Sbjct: 478 SAEKHKVARKPSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSS 523
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 39 FGSAENRRSPF-SIFDTNPRILT 104
+G N +SPF IF TNPRIL+
Sbjct: 180 YGFQGNEKSPFIKIFTTNPRILS 202
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -2
Query: 547 PDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSS-VPIPSIQRCSSWHRYSS 371
P+V M S + SY T + + + T +++ +P+P +R S Y+S
Sbjct: 145 PNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLPVPPPRRVSQNSSYAS 204
Query: 370 GGVIRATITSSK*P 329
G V AT S+ P
Sbjct: 205 GSVPAATAASTASP 218
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.6
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Frame = -2
Query: 583 PTTMS--VRRRRKSPDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIP 410
PT+ S + SP S + S + S+ ST+++ S S+ SSS P
Sbjct: 336 PTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPAS 395
Query: 409 SIQRCSSW--HRYSSGGVIRATITSSK*PPNS-DFRSSMRSLPYS 284
S SS H+ SS + SS NS RSS S +S
Sbjct: 396 SSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRSSSHSSSHS 440
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = -2
Query: 550 SPDVSEHMCSASGRSYNRSYV---STIAAISGLVLVQRISTRVSSSVPIPSIQRCSSWHR 380
S +S S+S +Y+ S + ST+ + S ++V SSS PIPS S +
Sbjct: 651 SSSISTIPISSSLSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYS 710
Query: 379 YSSGGVIRATITSSK*PPNSDFRSSMRS 296
S + ++++ + +S +S+ S
Sbjct: 711 ASLSNITHSSLSLTAMSSSSAIPTSVNS 738
>SPCC70.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 155
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 411 PPYNGAALGTDTPQGESS 358
PPY+ AA ++TPQ E+S
Sbjct: 112 PPYSPAATASNTPQNEAS 129
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 544 DVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSI 404
D+ S+S S S S+ + +S L + VSS+ IPSI
Sbjct: 107 DIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSI 153
>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -3
Query: 477 RLSPAWFWYRGSQRGCLHPCPYPPYN 400
++ P +W +R CL PYP +N
Sbjct: 102 KVFPKVYWIFNHRRWCLENAPYPNWN 127
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = -2
Query: 577 TMSVRRRRKSPDVSEHMCSASGRSYNRSYVSTIAAISGLVLVQRISTRVSSSVPIPSIQR 398
T S R + S VS + S+ S S V ++ V+++ T V S+P+PSIQ
Sbjct: 334 TRSAFRPKTSETVSSEVVSSPPTSPLHSPVKPVSNEQ----VEQV-TEVELSIPVPSIQE 388
Query: 397 CSSWHRYSSGGVI-RATITS 341
S +G + R ++TS
Sbjct: 389 AESQKPVLTGSSMRRPSVTS 408
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = +1
Query: 541 RRATFAAS*HSLSSGPAQTRRRPTPSGPASSRRSCTTPGRPSGGPTRRSSTES 699
+R FA + +G A RP P++ + PG P+ GPT S++ S
Sbjct: 179 QRPEFAQNVSQGFAGQAPYNVRPGYGMPSNQKPPNFAPGMPAPGPTAVSASPS 231
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +1
Query: 607 PTPSGPASSRRSCTTPGRPSGGPTRRSSTES 699
P PS P + + CT P +R S +S
Sbjct: 73 PLPSAPPNFKSVCTKTNHPESSSSRHSKKKS 103
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 444 ILCTRTKPEIAAIVDTYERLYD 509
+ CTR + E A VD YE+L D
Sbjct: 2156 LYCTRVQKERFASVDEYEKLKD 2177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,137
Number of Sequences: 5004
Number of extensions: 60351
Number of successful extensions: 195
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -