Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0981
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +2

Query: 443 DPLYQNQAGDSRYCGHIRTIVRPPAGRAH 529
           DP +   A D   C H+ T   P     H
Sbjct: 171 DPWFPRHASDLDNCNHLMTKFEPDLDMNH 199


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -2

Query: 271 CDMACRCMLDLVVNISMIACSSV 203
           C   C+C  D   N + + CS +
Sbjct: 761 CPAGCKCYNDRTWNTNAVDCSGL 783



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 510  RPLAEHMCSETSGDFRRL 563
            RPL+EH+ S    D+  L
Sbjct: 1328 RPLSEHIYSSIDSDYSTL 1345


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 236 SQYINDRLLVCTKALHGGPQ 177
           S Y N   L CT    GGPQ
Sbjct: 6   SMYNNVSPLQCTSPFLGGPQ 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,075
Number of Sequences: 438
Number of extensions: 4932
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)