Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0980
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    29   0.90 
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    27   3.6  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   3.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.8  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    26   4.8  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   6.3  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    26   6.3  
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    25   8.4  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   8.4  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   8.4  

>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 22/87 (25%), Positives = 44/87 (50%)
 Frame = +1

Query: 190 DVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMS 369
           +VE +   Q R  + I  +   +S+R K  +++   + S+ I  +L     ++EE  ++ 
Sbjct: 9   NVEDLKKKQIRQYKEIIRISKAQSIRIKELQLENERLLSENI--DLRTTAINLEE--QLE 64

Query: 370 DIHNRNTRNKHKLVVPMSRLHKIRNSF 450
            + N N  NK KL   ++R H+  ++F
Sbjct: 65  TVQNENEENKTKLAALLNRFHEETDNF 91


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 304 SQYIFENLMYVRKHIEEFPKMSD 372
           +Q IF +L++  +HIEEF + S+
Sbjct: 341 AQQIFRSLVFFLRHIEEFEEASE 363


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 130 YFSYFHSVMSYGILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKEIKVLTMPS 306
           + +Y   V    I LWGNA D+    +L   +   + N+  ++ + E  K I V   P+
Sbjct: 175 HIAYMVFVEMAQISLWGNATDLS---LLTNLSYEELQNLQGQKVVEESQKNILVNDFPT 230


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +1

Query: 193 VEMIFILQKRAIRAIYNMHSRESLREKFKEI--KVLTMPSQYIFENLMYVRKHIEEFPKM 366
           +E +FI + R+I     +   E L+ +   +  +V T+ S +I   L  + +  +EF  +
Sbjct: 547 LESVFISKPRSIGDAQKLEILEYLQSQSSTVSNQVFTLLSNFIQNPLFVLDECFDEFRNL 606

Query: 367 SDIHNRNT 390
             +HN +T
Sbjct: 607 ILMHNSHT 614


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 407  SLCLFLVFLL-CMSDILGNSSICLRTYIKF 321
            SL ++ VFLL C++++L   + C R ++ F
Sbjct: 1586 SLYMYNVFLLQCLTELLSGYNACKRCFLNF 1615


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 416 GTTSLCLFLVFLLCMSDILGNSSI 345
           GTTS+C+F   LL  ++I+ N+ I
Sbjct: 94  GTTSVCVFAAELLRQAEIMVNAKI 117


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
 Frame = -3

Query: 437 ILCNLLIGTTSLCLFLVFLLCMSDILGNS-SICLRTYIKFSKMYWDGI-VR-------TL 285
           ++   ++   +  L+ + LL + +ILGNS  I     IK  +   + + VR       TL
Sbjct: 334 VISRTILAPLAAALWPLSLLKVGNILGNSWRIAFNLSIKAGEALANALCVRAQGMRPVTL 393

Query: 284 ISLNFSLRDSLECML*IARIALFCRINIISTSAALPHSKMP*DMTLWK*LK*TKRAVSAF 105
           I  +   R  LEC+L +A        N++  +  +  + MP D  LW  LK        F
Sbjct: 394 IGFSLGARTILECLLHLADRG---ETNLVE-NVIVMGAPMPTDAKLW--LKMRCVVAGRF 447

Query: 104 VNI 96
           VN+
Sbjct: 448 VNV 450


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 538 HLCNKAYYKVNDYLEDCTKWE 600
           HL  K+YY  N ++  C  WE
Sbjct: 242 HLVQKSYYLQNRHVFPCVHWE 262


>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +1

Query: 238 YNMHSRESLREKFKEIKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVV 414
           Y  ++    R+KFKE+KV + P+++  + +    K +E   + S I+     NK  LVV
Sbjct: 26  YREYTIRRTRDKFKELKVESDPAKF-EQGIKDSEKLLEIIQRQSIIN--GMYNKRNLVV 81


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 249 VHVINSTYSSFLQNKYH 199
           V + +  YSS LQNKYH
Sbjct: 166 VRISSDKYSSALQNKYH 182


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
 Frame = +1

Query: 109 ADTARLVYFSYFHSVMSYG--ILLWGNAADVEMIFILQKRAIRAIYNMHSRESLREKFKE 282
           ADT+R  Y   F  V+     IL   +A D E     + + +       S E  R  F  
Sbjct: 145 ADTSRKAYDKEFKKVVEASDVILYVLDARDPEGT---RSKDVERQVLASSAEEKRLIFVI 201

Query: 283 IKVLTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLS 462
            K+  +PS+ + + + Y+R      P  S   + N+  KH+     S +  +  S    S
Sbjct: 202 NKIDLVPSEVLNKWVTYLRNFFPTIPMRSASGSGNSNLKHQSASASSTISNLLKSLKSYS 261

Query: 463 VR 468
            +
Sbjct: 262 AK 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,103
Number of Sequences: 5004
Number of extensions: 55713
Number of successful extensions: 143
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)