Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0980
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0361 + 17207657-17207701,17208850-17209773 30 2.2
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314... 29 5.0
02_01_0679 - 5048653-5051394 29 5.0
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 28 6.6
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396... 28 8.7
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 28 8.7
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 28 8.7
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 28 8.7
>10_08_0361 + 17207657-17207701,17208850-17209773
Length = 322
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 325 LMYVRKHIEEFPKMSDIHNRNTRNKHKLVVPMSRLHKIRNSFGCLSVRLYNK 480
LMY + +E+ +S RN + H LV P +LH N G ++ L K
Sbjct: 129 LMYAGQQLEDNQLLSQCDLRNDQTFHVLVCPNDKLHVFINVRGEKTIGLETK 180
>06_01_0446 -
3147007-3147111,3147215-3147367,3147445-3147497,
3147670-3147988,3148754-3148892,3149141-3149222,
3149711-3149789,3150135-3150314,3150811-3151070,
3151192-3151294,3151469-3151609,3151797-3151870,
3153536-3153635,3154108-3154167,3154381-3154428,
3154519-3154610,3155023-3155071,3155810-3155879,
3156408-3156505,3157288-3157347
Length = 754
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +1
Query: 187 ADVEMIFILQKRAIRAIYNMHSRESLREKFKEI 285
AD+E I + K A RA+Y++H + S RE K++
Sbjct: 113 ADMEFISMGMKVATRAVYSLH-KTSTREHIKKV 144
>02_01_0679 - 5048653-5051394
Length = 913
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 475 NKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLED 585
+KIP D+ +H + +KE L NK Y V D + D
Sbjct: 252 SKIPTDLDTMHHGKLNDELKEVLSNKKYLIVLDDVWD 288
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 394 NKHKLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVND 573
N H + M+R H+I S L RL + + + LH+ + K + + NK+ +
Sbjct: 1022 NPHADIQAMNRAHRIGQSNRLLVYRLVVRASVEERILHLAKKKLMLDQLFVNKS--ESQK 1079
Query: 574 YLEDCTKW 597
+ED +W
Sbjct: 1080 EVEDIIRW 1087
>12_01_0500 +
3966456-3968556,3968640-3969087,3969524-3969718,
3969891-3970119
Length = 990
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 403 KLVVPMSRLHKIRNSFGCLSVRLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLE 582
KL++ ++RL + F + +Y K P+DVQ H + + +C K K ND ++
Sbjct: 666 KLLLEVNRLLRPGGLFVWSATPVYRKTPEDVQIWH---DMAALTKSMCWKMVKKTNDTVD 722
Query: 583 D 585
+
Sbjct: 723 E 723
>11_01_0780 -
6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 466 RLYNKIPQDVQNLHIHRFKKTIKEHLCNKAYYKVNDYLEDCTKWE 600
R +N++P D + I++H+ +K Y+ V D L + T W+
Sbjct: 224 RRHNRLPAD--RCTVQDLIDNIRDHIQDKRYFIVIDDLWETTSWD 266
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -3
Query: 482 ILLYRRTDKHPNEFRILCNLLIGTTSLCLFLVFLLCMSDILGNSSIC 342
++L R+T + R C + SL + FL+ +S ++ SIC
Sbjct: 252 LVLSRKTPRSDKSIRAACRYFLIECSLAFIVAFLINVSVVVVAGSIC 298
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = +1
Query: 292 LTMPSQYIFENLMYVRKHIEEFPKMSDIHNRNTRNKHKLVV 414
+ PS++ E+L + + + P+ + N N + KH+ V+
Sbjct: 816 MEFPSEFCNESLPVISRDLHPIPEERVVENFNVQEKHEAVI 856
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,671,570
Number of Sequences: 37544
Number of extensions: 322595
Number of successful extensions: 709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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