Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0979
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383...    29   3.2  
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225...    28   9.7  

>06_03_0670 -
           23336385-23336504,23336769-23337092,23338315-23338387,
           23338715-23338761,23338955-23339104,23339409-23339474,
           23339940-23340013,23340740-23341520,23341730-23342146,
           23344001-23344003
          Length = 684

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 776 VHLLSSPPQRKYRLFF*ILC 717
           VHL+ S  QRKYR+ F +LC
Sbjct: 529 VHLVFSDEQRKYRVLFDVLC 548


>01_02_0071 +
           10822008-10822011,10822219-10822364,10822452-10822544,
           10822722-10822781,10822855-10823127,10823229-10823303,
           10823419-10823475,10823593-10823733,10823813-10823863,
           10823905-10823955,10823956-10824051,10824159-10824242,
           10824330-10824432,10824518-10824600
          Length = 438

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 196 NKKCQIHKYFCRIRFNFTFFLNKILSFAPSICNFVLTN-NKQIPKLPNIIV 345
           N  C  H YFC        +LN +L + P   + V+ + NK   ++P I V
Sbjct: 137 NVACLKH-YFCSTTAKEELYLNLVLEYVPETVHRVIRHYNKMSQRMPLIYV 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,150,460
Number of Sequences: 37544
Number of extensions: 264263
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)