Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0979
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   5.6  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.6  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 362 MSWIFVTIMLGNFGICLLFVN 300
           MSW  V + +G FG+ LL  N
Sbjct: 1   MSWQRVFLAVGLFGVLLLLTN 21


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 231 PTEIFMYLT-FFIYYK 187
           P   FM+LT FFI+YK
Sbjct: 471 PVAYFMFLTFFFIHYK 486


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 231 PTEIFMYLT-FFIYYK 187
           P   FM+LT FFI+YK
Sbjct: 457 PVAYFMFLTFFFIHYK 472


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 231 PTEIFMYLT-FFIYYK 187
           P   FM+LT FFI+YK
Sbjct: 491 PVAYFMFLTFFFIHYK 506


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/16 (62%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 231 PTEIFMYLT-FFIYYK 187
           P   FM+LT FFI+YK
Sbjct: 440 PVAYFMFLTFFFIHYK 455


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -3

Query: 353 IFVTIMLGNFGICLLFVNTKLQIEGANDRILFKKKV 246
           IFVT ++GN   C++    K  +  A +  LF   V
Sbjct: 63  IFVTGLVGNVSTCVVIARNK-SMHTATNYYLFSLAV 97


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 665 SISSNSIQYIFGRVIILHRVSKKKGGIFFVVVMITSVPKTI 787
           S SSN I   FG  II    ++K   +     M+T +P+T+
Sbjct: 78  SHSSNGIHTGFGGSIITIPPTRKLPPLHPHTAMVTHLPQTL 118


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 124  NILSKSTEKRLVRYLTISS*EFIINKKCQIHKYFCRIRFNFTFFLNKILSFAPSICNFVL 303
            N++S S   RL   ++       +NK C IH+   +   +   F  + +    S C  V 
Sbjct: 1660 NVISDSESGRLDTEMSTWGYHHNVNKHCTIHRTQVKETDDKICFTMRPVVSCASGCTAVE 1719

Query: 304  TNNK 315
            T +K
Sbjct: 1720 TKSK 1723


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,727
Number of Sequences: 438
Number of extensions: 3392
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)