Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0973
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 26 5.1
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 6.7
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi... 26 6.7
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 25 8.9
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 25 8.9
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual 25 8.9
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po... 25 8.9
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 25 8.9
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 8.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 310 LRERRSLPSGKLGLHIGVCKETGSEGRQGSVGRKRSIRR 426
LRER + SG +G+H+ G G +GRK ++RR
Sbjct: 428 LRERMAKMSGGIGMHV-----FGLPGLAAPIGRKNTLRR 461
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 305 GDFVKDVAFQVENLDYILEYARKQGAKVVKDLWEEKDQYGVVRMATLK 448
GD + D+ F+ E L IL Y Q + + KDL + ++ AT+K
Sbjct: 303 GDRLMDMGFE-ETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMK 349
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 466 SITAVRFQRSHSDNAVLIF-FFPQILDDLRSLFPCILQYVVQVFHLEGYVFHEV 308
++TA F+ S + A +I FF L+D S+FP L+ V+ G++ + V
Sbjct: 301 NVTATPFEVSDMNWAYIIASFFRTCLNDFVSVFPEWLKGFVEEKRTIGFIIYSV 354
>SPBC215.11c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 545 KYLPKVEINFIDHIVGNQP---ENEMEEAASWYERCLHSTDSGQLTT 676
K LP++ INFID P EN + EA Y+ + +T G + T
Sbjct: 55 KRLPELNINFIDTADSYGPEVSENLLREALYPYKGLIIATKGGLVRT 101
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 761 GSLIGTLTVSSQFAITTDRRAEYSV 687
G++ GTLT SQF TT +A SV
Sbjct: 902 GTVTGTLTSGSQFFTTTIAQASGSV 926
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 463 YSHSSRSF*IYRTIFAGIPTIRERSDQQIFTQSGNKLYRSHCW 591
Y S R+ + T + G T +R D QI +++YR+H W
Sbjct: 240 YPRSDRANEVLYTQYLGFLT--KRGDYQIAIYMFDEMYRTHHW 280
>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 272
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/51 (21%), Positives = 26/51 (50%)
Frame = +2
Query: 518 QLLEKDPISKYLPKVEINFIDHIVGNQPENEMEEAASWYERCLHSTDSGQL 670
++ + P K + + + +I+ PE E +++ Y C++ T++G L
Sbjct: 62 EIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEKQSNIIYNSCIYITENGNL 112
>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1396
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 370 PCILQYVVQVFHLEGYVF----HEVTMNCHFVYEFCFHRLIL 257
PC++ Y +QVF F H+ + FV+ + F L+L
Sbjct: 405 PCLIPYRLQVFATAKVTFFQYLHDYSYIATFVFTYVFQALML 446
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 612 ISFSGWFPTM*SIKFISTLGKYLLIGSFSNSWYPG 508
IS +GW T+ +F + Y++IGSF W+PG
Sbjct: 321 ISANGW--TISRYRFFA----YVMIGSFVFYWFPG 349
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = -2
Query: 386 PSLPVSLHTPICSPSFPLGRLRLSRSHHELPLRLRILFPQ-AH-IALETRRLSYSF*RHE 213
P+L + L + S SF G + S P L ILF Q H + LE ++ SF
Sbjct: 500 PNLNLLLGENVASYSFKHGMADMLNSLASTPSPLPILFDQCVHTVKLEDNTVNLSFVNET 559
Query: 212 TKSV 201
T SV
Sbjct: 560 TVSV 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,862
Number of Sequences: 5004
Number of extensions: 80058
Number of successful extensions: 229
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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