Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0973
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0506 - 3677786-3677972,3678731-3679884 46 4e-05
02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149 30 2.3
01_06_0157 + 27075179-27075529,27075849-27076043,27077705-270780... 29 3.1
03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672... 29 4.0
06_03_0803 + 24737115-24737366,24738921-24739004,24739152-247392... 28 7.1
03_02_0987 - 12995754-12996347,12996440-12997684,12997772-129978... 28 7.1
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 28 9.3
05_03_0308 - 12061871-12063205,12063340-12063671,12063974-12064052 28 9.3
>02_01_0506 - 3677786-3677972,3678731-3679884
Length = 446
Score = 45.6 bits (103), Expect = 4e-05
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 20/199 (10%)
Frame = +2
Query: 68 PDDGRF--LAFDHVTFWVSNAKQAASYYVTRFGFEPLAYSGLETGSRQISSHAVRMNKII 241
P RF LAF HV W ++A AA + G A S L TG+ +S +R +
Sbjct: 39 PRSDRFQALAFHHVELWCADAASAAGRFAFALGAPLAARSDLSTGNSAHASLLLRSASVA 98
Query: 242 FVFQAQY--------EPVETEFVNE---------VAIHGDFVKDVAFQVENLDYILEYAR 370
F+F A Y + T + A HG V VA +V + + R
Sbjct: 99 FLFTAPYGGDHGVGADAATTASIPSFSPGAARRFAADHGLAVHAVALRVAD---AADAFR 155
Query: 371 KQGAKVVKDLWEEKDQYGVVRMATLKTYGSNTHTLVDR-SKYTGPFLPGYQLLEKDPISK 547
A + ++ D G +A ++ YG V PFLPG++ +
Sbjct: 156 ASVAAGARPAFQPADLGGGFGLAEVELYGDVVLRFVSHPDGADAPFLPGFEGVSNPGAVD 215
Query: 548 YLPKVEINFIDHIVGNQPE 604
Y + DH+VGN PE
Sbjct: 216 Y----GLRRFDHVVGNVPE 230
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 649 FHRFWSVDDKQVCTEYSALRSVVMANWEETVKVPINEP 762
FH F + V T S L SVV+AN ETV +P+NEP
Sbjct: 244 FHEFAEFTAEDVGTAESGLNSVVLANNAETVLLPLNEP 281
>02_03_0069 - 14728968-14729368,14729434-14729800,14730099-14730149
Length = 272
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -3
Query: 274 FHRLILRLKHEDYLIHSDGMRRNLSRTRLQTAVSQWLE 161
F R LR HED LI M R + T +Q + QWLE
Sbjct: 28 FLRADLRPIHEDELIILFSMVRKIKVTPVQCMICQWLE 65
>01_06_0157 +
27075179-27075529,27075849-27076043,27077705-27078036,
27078157-27078577
Length = 432
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 338 ENLDYILEYARKQGAKVVKDLWEEKDQYG 424
+ LD++L ARK G KV+ L + D +G
Sbjct: 117 KGLDFVLSEARKYGIKVILSLVDNYDSFG 145
>03_04_0196 -
18365840-18366701,18366875-18366950,18366989-18367237,
18367819-18367837
Length = 401
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 274 FHRLILRLKHEDYLIHSDGMRRNLSRTRLQTAVSQWLE 161
F R LRL ED LI M R + + +Q + QWLE
Sbjct: 139 FPRADLRLIREDELIILFSMVRKIKVSHVQCMIRQWLE 176
>06_03_0803 +
24737115-24737366,24738921-24739004,24739152-24739255,
24739321-24739445,24739549-24739707,24740120-24740237,
24740317-24740851,24740948-24741042,24741153-24741431,
24741478-24741592,24741669-24741855,24741934-24742490
Length = 869
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = -2
Query: 53 PYKSSFCIKNSINVTRA 3
PY+SSFC+ +S+N T+A
Sbjct: 487 PYQSSFCLDSSLNRTKA 503
>03_02_0987 -
12995754-12996347,12996440-12997684,12997772-12997838,
12997982-12998073
Length = 665
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 627 RGTKDASIPQILVS*RQASLHRIFRSAVSCDGELGGNGQGAD 752
+G K ++ +IL++ Q SLH + ++ + GG G D
Sbjct: 247 KGLKQETVTRILINYAQNSLHGLMARDIAAAAKCGGGGGDTD 288
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 347 PSFPLGRLRLSRSHHELPLRL 285
P+ LGRLRL R H PLR+
Sbjct: 181 PAGALGRLRLPRDRHNPPLRM 201
>05_03_0308 - 12061871-12063205,12063340-12063671,12063974-12064052
Length = 581
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -2
Query: 221 RHETKSV*NPSPDR-CKPMARSQTSSRSNWPLVWRSKPKT 105
R+ K + +P P + + +A+ ++SS VWR KPKT
Sbjct: 528 RYWRKPIKSPVPTKKLEQLAQKKSSSAPKSKKVWRKKPKT 567
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,728,050
Number of Sequences: 37544
Number of extensions: 521090
Number of successful extensions: 1504
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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