Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0973
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0) 76 4e-14
SB_23830| Best HMM Match : Glyoxalase (HMM E-Value=4.1e-08) 76 4e-14
SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22) 29 4.1
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_22424| Best HMM Match : E-MAP-115 (HMM E-Value=5.5) 29 5.5
SB_46286| Best HMM Match : Astacin (HMM E-Value=9e-15) 28 7.2
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 28 7.2
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 7.2
SB_53913| Best HMM Match : Bombolitin (HMM E-Value=3) 28 7.2
SB_43639| Best HMM Match : AT_hook (HMM E-Value=3.3) 28 9.5
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08) 28 9.5
>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
Length = 808
Score = 75.8 bits (178), Expect = 4e-14
Identities = 30/38 (78%), Positives = 36/38 (94%)
Frame = +1
Query: 649 FHRFWSVDDKQVCTEYSALRSVVMANWEETVKVPINEP 762
FHRFWSVDDKQ+ TE+SALRS+V+ NWEET+K+PINEP
Sbjct: 698 FHRFWSVDDKQIHTEFSALRSIVVTNWEETIKMPINEP 735
Score = 49.2 bits (112), Expect = 4e-06
Identities = 33/94 (35%), Positives = 51/94 (54%)
Frame = +2
Query: 371 KQGAKVVKDLWEEKDQYGVVRMATLKTYGSNTHTLVDRSKYTGPFLPGYQLLEKDPISKY 550
K+GA V++ WEE D G V MAT++T L + ++ F+ +L D ++
Sbjct: 598 KRGAVSVREPWEESDGNGSVTMATVQT-------LPNVAQRWSSFI---KLKFDDFLNS- 646
Query: 551 LPKVEINFIDHIVGNQPENEMEEAASWYERCLHS 652
PK ++FIDH+VGNQP + M A W R ++
Sbjct: 647 -PKAGLHFIDHVVGNQPNDAMVPIAEWPTRSAYA 679
>SB_23830| Best HMM Match : Glyoxalase (HMM E-Value=4.1e-08)
Length = 306
Score = 75.8 bits (178), Expect = 4e-14
Identities = 30/38 (78%), Positives = 36/38 (94%)
Frame = +1
Query: 649 FHRFWSVDDKQVCTEYSALRSVVMANWEETVKVPINEP 762
FHRFWSVDDKQ+ TE+SALRS+V+ NWEET+K+PINEP
Sbjct: 131 FHRFWSVDDKQIHTEFSALRSIVVTNWEETIKMPINEP 168
Score = 68.5 bits (160), Expect = 6e-12
Identities = 43/117 (36%), Positives = 66/117 (56%)
Frame = +2
Query: 302 HGDFVKDVAFQVENLDYILEYARKQGAKVVKDLWEEKDQYGVVRMATLKTYGSNTHTLVD 481
HGD VKD+AF+VE+ + + K+GA V++ WEE D G V MAT++T L +
Sbjct: 8 HGDGVKDIAFEVEDCVALYKECVKRGAVSVREPWEESDGNGSVTMATVQT-------LPN 60
Query: 482 RSKYTGPFLPGYQLLEKDPISKYLPKVEINFIDHIVGNQPENEMEEAASWYERCLHS 652
++ F+ +L D ++ PK ++FIDH+VGNQP + M A W R ++
Sbjct: 61 VAQRWSSFI---KLKFDDFLNS--PKAGLHFIDHVVGNQPNDAMVPIAEWPTRSAYA 112
>SB_22057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 63.3 bits (147), Expect = 2e-10
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Frame = +2
Query: 308 DFVKDVAFQVENLDYILEYARKQGAKVVKDLWEEKDQYGVVRMATLKT-YGSNTHTLVDR 484
D VKD+A +VEN+ Y E G V++ D YG V + +++ G+ H+L++
Sbjct: 64 DTVKDIALEVENVSYATEIVAVNGGTVLEFTKVCDDCYGTVTSSMIRSPCGNVCHSLLNT 123
Query: 485 SKYTGPFLPGYQLLEKDPISKYL--------PKVEINFIDHIVGNQPENEMEEAASWYER 640
+KYTG FLPG+ ++ P Y P I +DH+ + M E WY +
Sbjct: 124 TKYTGLFLPGF---KRSPTQTYCQLNFNFTKPNNVITHVDHVAIACEKGSMLEIIDWYVK 180
Query: 641 CL 646
CL
Sbjct: 181 CL 182
>SB_11547| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.22)
Length = 432
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Frame = -3
Query: 472 SVSITAVRFQRSHSDNAVLIFFFPQILDDLRS-LFPCILQYVVQVFHLEGYVFH----EV 308
S S+ + H + FP + D S LF + +Y+++ FH G + H V
Sbjct: 78 STSLERYIIRTFHQSGKIHPPHFPPVWKDTSSALFTSLERYIIRTFHQSGKIHHPHFPPV 137
Query: 307 TMNCHFVYEFCFHRLILRLKHEDYLIH 227
+ R I+R H+ IH
Sbjct: 138 WKDTSSALSTSLERYIIRTFHQSGKIH 164
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 514 IPTIRERSDQQIFTQSGNKLYRSHCWEPARERNGGSRFVVRKMPPFHRFWSVDDK 678
+ T+R RS + + T S ++ C + R R +R ++ K + FWS +DK
Sbjct: 50 VGTMRGRSGEVVETIS-RRMIDICCLQETRWRGSSARMIMGKDTRYKFFWSSNDK 103
>SB_22424| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
Length = 139
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 121 VRNPKRDVVKSQETTIVRLSALVRISR 41
V RDVV++QETTI RL A+ + ++
Sbjct: 15 VNKQLRDVVRAQETTIARLVAMCQSNK 41
>SB_46286| Best HMM Match : Astacin (HMM E-Value=9e-15)
Length = 244
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 436 HSDNAVLIFFFPQILDDLRSLFP-CILQYVVQVFH 335
H A L+ F P +LD L +F C + Y +F+
Sbjct: 17 HGPKAQLVLFLPDVLDVLSGIFTRCFIGYFYPMFY 51
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 125 KQAASYYVTRFGFEPLA 175
KQAA YY+ +FG +P+A
Sbjct: 400 KQAAGYYMEKFGVQPIA 416
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +1
Query: 514 IPTIRERSDQQIFTQSGNKLYRSHCWEPARERNGGSRFVVRKMPPFHRFWSVDDK 678
+ T+R RS + + T S ++ C + R R +R ++ K + FWS +DK
Sbjct: 50 VGTMRGRSGEVVETIS-RRMIDICCLQETRWRGSSARMIMGKDTRYKFFWSGNDK 103
>SB_53913| Best HMM Match : Bombolitin (HMM E-Value=3)
Length = 253
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = -3
Query: 316 HEVTMNCHFVYEFCFHRLILRLKHEDYLIHSDGMRRNLSRTRLQTAVSQW 167
+E + F Y FC R+K + + SD R R QT W
Sbjct: 24 YECAVKLSFSYRFCVFVGTGRIKMKTLRVDSDLFENGTKRLRFQTKTDSW 73
>SB_43639| Best HMM Match : AT_hook (HMM E-Value=3.3)
Length = 249
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Frame = -3
Query: 268 RLILRLKHEDYLIHSDGMRR-NLS--RTRLQTAVSQWL 164
RLIL++K EDY+ + D +RR N+ T+L +WL
Sbjct: 118 RLILKIKWEDYISNEDVLRRANVEDIETKLARNRLRWL 155
>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
Length = 652
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 493 YRTIFAGIPTIRERSDQQIFTQSGNKLYRSHCWEPARERNGGSRFVVRKMPPFHRFWSVD 672
+R + T+R RS + + T S ++ C + R R ++ ++ K + FWS +
Sbjct: 43 FRIATLNVGTMRGRSGEVVETIS-RRMIDICCLQETRWRGSSAQMIMGKDTRYKFFWSGN 101
Query: 673 DK 678
DK
Sbjct: 102 DK 103
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,228,647
Number of Sequences: 59808
Number of extensions: 607385
Number of successful extensions: 1507
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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