Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0973
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06570.1 68414.m00696 4-hydroxyphenylpyruvate dioxygenase (HP...    44   1e-04
At5g07860.1 68418.m00904 transferase family protein similar to a...    30   1.9  
At4g24460.1 68417.m03506 expressed protein                             28   7.8  

>At1g06570.1 68414.m00696 4-hydroxyphenylpyruvate dioxygenase (HPD)
           identical to 4-hydroxyphenylpyruvate dioxygenase (HPD)
           SP:P93836 [Arabidopsis thaliana (Mouse-ear cress)]
          Length = 473

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 53/207 (25%), Positives = 82/207 (39%), Gaps = 21/207 (10%)
 Frame = +2

Query: 47  YTDKGRKPDDGRFLAFDHVTFWVSNAKQAASYYVTRFGFEPLAYSGLETGSRQISSHAVR 226
           +  K  K D  +   F H+ FW  +A   A  +    G    A S L TG+   +S+ + 
Sbjct: 60  FVRKNPKSDKFKVKRFHHIEFWCGDATNVARRFSWGLGMRFSAKSDLSTGNMVHASYLLT 119

Query: 227 MNKIIFVFQAQYEPV----ETEFVNEVAI--------------HGDFVKDVAFQVENLDY 352
              + F+F A Y P     E +     +I              HG  V+ VA +VE+ + 
Sbjct: 120 SGDLRFLFTAPYSPSLSAGEIKPTTTASIPSFDHGSCRSFFSSHGLGVRAVAIEVEDAES 179

Query: 353 ILEYARKQGAKVVKDLWEEKDQYGVVRMATLKTYGSNTHTLVD-RSKYT--GPFLPGYQL 523
               +   GA          +    V +A +K YG      V  +++ T    FLPG++ 
Sbjct: 180 AFSISVANGAIPSSPPIVLNE---AVTIAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFER 236

Query: 524 LEKDPISKYLPKVEINFIDHIVGNQPE 604
           +E    S +     I  +DH VGN PE
Sbjct: 237 VE--DASSFPLDYGIRRLDHAVGNVPE 261



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +1

Query: 649 FHRFWSVDDKQVCTEYSALRSVVMANWEETVKVPINEP 762
           FH+F       V T  S L S V+A+ +E V +PINEP
Sbjct: 275 FHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEP 312


>At5g07860.1 68418.m00904 transferase family protein similar to
           anthranilate N-hydroxycinnamoyl/benzoyltransferase,
           Dianthus caryophyllus [gi:2239091]; contains Pfam
           transferase family domain PF002458
          Length = 454

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +2

Query: 431 RMATLKTYGSNTHTL-VDRSKYTGPFLPGYQLLEKDPI--SKYLPKVEINFIDH 583
           R++TLKT  S +H++ VD +     F+     L    I  SKY+P V  +F DH
Sbjct: 89  RISTLKTNDSRSHSVFVDCNNSPAGFIHAESDLSVSDILGSKYVPLVVQSFFDH 142


>At4g24460.1 68417.m03506 expressed protein 
          Length = 431

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 405 SHRSLTTFAPCFLAYSNM*SKF-STWKATSFTKSP 304
           S+RS T  + CFL  S++ S+F ST K TS  + P
Sbjct: 40  SYRSTTMMSMCFLRRSDLRSRFLSTPKTTSPMRRP 74


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,781
Number of Sequences: 28952
Number of extensions: 418854
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)