Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0972
(714 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 31 1.2
01_01_0540 + 3957622-3960903 30 1.6
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859... 30 2.1
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 30 2.1
08_02_1509 + 27611628-27611810,27611890-27612903,27612996-276139... 29 4.8
02_01_0050 - 352017-354272 29 4.8
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 28 6.4
05_01_0214 - 1615519-1616775 28 6.4
02_01_0726 + 5440341-5440661,5441574-5441620,5442917-5442977,544... 28 6.4
12_02_0204 - 15502331-15502459,15502875-15503129 28 8.5
11_06_0198 - 21158350-21159528 28 8.5
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 500 HKSQHESRDGGAVHGSYSLVEPD-GSVRKVDYTAD 601
H+S HE+R G + SL+EPD G+ K+ AD
Sbjct: 2684 HESLHENRHGAKDEQTLSLIEPDTGNAEKLPNEAD 2718
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Frame = -2
Query: 356 AMSVAKRSGVDDGGSVDYRGGVDEWS----CMDNGCGIMSRGVMSRGIVCRGIMTDDALG 189
A + AKRSG+ GG+ GV S CM G+ ++ SR VC + T +
Sbjct: 408 AYTAAKRSGL--GGATMSAEGVWRASSGQLCMVACLGVGAKACHSR--VCLYLQTTFSAT 463
Query: 188 RNCRSVVVWQKTSVGGG 138
R RS+ V Q TS+GGG
Sbjct: 464 R--RSITVGQITSIGGG 478
>02_05_0267 -
27284781-27284957,27285082-27285126,27285858-27285923,
27286043-27286114,27286225-27286350,27286563-27287217,
27287313-27287521
Length = 449
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 545 YHVRHHHRGSRAGSCGHQCEGQ 480
+H HHH+ ++ GSC HQ + Q
Sbjct: 169 HHHHHHHQLTKEGSCNHQQQEQ 190
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 575 RNHQAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSR 459
R+ + SS RHHH S G + E + RS+H +
Sbjct: 1226 RSSKKDHSSSRSHRHHHHRSSGDDSGSESEERGRSRHKK 1264
>08_02_1509 +
27611628-27611810,27611890-27612903,27612996-27613978,
27614079-27614352
Length = 817
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = -2
Query: 326 DDGGSVDYR-GGVDEWSCMDNGCGIMSR--GVMSR--GIVCRGIMTDDALGRNCRS 174
DDGG D R GG D + M+ + SR G+ R +VCRG D G CR+
Sbjct: 509 DDGGGRDERGGGRDAVTRMNTIVDLFSRATGIWFRQIDVVCRGGAALDDAGAVCRA 564
>02_01_0050 - 352017-354272
Length = 751
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 221 CRGIMTDDALGRN--CRSVVVWQKTSVGGGQHGAKDE 117
CR I +A+ R CR+++ W VG GQ+ +E
Sbjct: 326 CRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEE 362
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 270 QWVRHNEQGRNEPRHSVPGHHDGRCS 193
Q RHNE G +E PG+H CS
Sbjct: 454 QNARHNEDGVDESSDGGPGYHVNACS 479
>05_01_0214 - 1615519-1616775
Length = 418
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/44 (29%), Positives = 16/44 (36%)
Frame = -2
Query: 572 NHQAQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIWGEPG 441
+H G S H HHH G H +G S + PG
Sbjct: 197 SHDHDHGGSDHDHHHHEDQEHGHVHHHEDGHGNSITVNLHHHPG 240
>02_01_0726 +
5440341-5440661,5441574-5441620,5442917-5442977,
5442978-5443035,5443303-5443463,5443692-5443808,
5443888-5443989,5444834-5444908,5444996-5445084,
5445171-5445220,5445562-5445641,5445744-5445953,
5446103-5446170,5446363-5446423,5446719-5447081
Length = 620
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -2
Query: 578 VRNHQAQRGSSYHVRHHHRGSRAGSCGHQCE 486
V +H G +H HHH GS A + E
Sbjct: 564 VDHHHHHHGHHHHGHHHHEGSSAAAAAPDLE 594
>12_02_0204 - 15502331-15502459,15502875-15503129
Length = 127
Score = 27.9 bits (59), Expect = 8.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 543 PCTAPPSRLSCW 508
PC+ PP+RL CW
Sbjct: 54 PCSPPPARLHCW 65
>11_06_0198 - 21158350-21159528
Length = 392
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Frame = -2
Query: 542 HVRHHHRGSRAGS---CGHQCEGQ 480
H +HHH G GS C QCE Q
Sbjct: 113 HEQHHHGGGHGGSRPDCREQCEHQ 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,153
Number of Sequences: 37544
Number of extensions: 341672
Number of successful extensions: 1229
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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