Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0972
         (714 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)                      33   0.30 
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   30   1.6  
SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)           29   3.7  
SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)                     28   6.5  
SB_28637| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 919

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
 Frame = -2

Query: 644 HFTNIELMKLTHDGHQRCSLLYVRNHQAQRGSSYHVRHHHRGSR-AGSCGH---QCEGQP 477
           H T+       H GH     +    HQ  +   +H  HHHR  +   S GH   +  G+ 
Sbjct: 405 HSTSGPFSPPRHHGHGGLEAIQTSKHQQDQHHHHHHHHHHRHHKHRSSSGHSTTEASGRR 464

Query: 476 RSKHS 462
            S HS
Sbjct: 465 ASDHS 469


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -1

Query: 264  VRHNEQGRNEPRHSVPGHHDGRCSGTKLPQRGGMAED 154
            +RH   GR   R  VP HH GR      P    MA D
Sbjct: 1625 LRHLRHGRARHRLKVPAHHRGRHRKKATPSSTDMARD 1661


>SB_42829| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=8.2)
          Length = 127

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 266 GCGIMSRGVMSRGIVCRGIMTDDALGRNCRSVVVWQKTSVGGGQHG 129
           G G+M   VM  G++  G+M D  +G       V     +GGG  G
Sbjct: 57  GGGVMGGSVMGDGVIGGGVMDDSVMGGGVIGGSVMGDGVMGGGVMG 102


>SB_30516| Best HMM Match : GETHR (HMM E-Value=0.9)
          Length = 1058

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 563 AQRGSSYHVRHHHRGSRAGSCGHQCEGQPRSKHSRIW 453
           A  G+S+HV   H  S      H    Q  ++H R+W
Sbjct: 360 ASHGTSWHVMARHGTSWQVMASHGTSWQVMARHGRLW 396


>SB_28637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/64 (21%), Positives = 32/64 (50%)
 Frame = +2

Query: 335 FSWLRSWPRHLCKSPIFKKFDFNKFICQPY*CLMFVQAHPKYDYAYSVADPHTGDHKSQH 514
           FS  +S  + L  +PI  K +  + +C+   C M ++   + +  +SVA  +  + + ++
Sbjct: 51  FSCWKSSAKALRFTPISNKVELRESVCRSPQCFMGIKKETRLEAPFSVALKYRRNSRGKY 110

Query: 515 ESRD 526
             R+
Sbjct: 111 NKRN 114


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 461  DYAYSVADPHTGDHKSQHESRDGGAVHG 544
            D+AY   DPHT  HK  H  R  G + G
Sbjct: 1425 DFAYVARDPHTSKHKC-HMFRCHGNISG 1451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,091,697
Number of Sequences: 59808
Number of extensions: 373288
Number of successful extensions: 1089
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)