Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0971
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g12450.1 68417.m01970 expressed protein 30 0.29
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 29 0.67
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 27 2.7
At3g61940.1 68416.m06956 zinc transporter, putative similar to z... 27 2.7
At2g07630.1 68415.m00881 hypothetical protein 27 2.7
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 27 2.7
At1g21630.1 68414.m02708 calcium-binding EF hand family protein ... 27 2.7
At5g53440.1 68418.m06641 expressed protein 27 3.6
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 27 3.6
At2g12100.1 68415.m01300 Ulp1 protease family protein contains P... 27 3.6
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to... 27 3.6
At5g45350.1 68418.m05567 proline-rich family protein contains pr... 26 4.8
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 26 4.8
At3g22600.1 68416.m02855 protease inhibitor/seed storage/lipid t... 26 4.8
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 26 4.8
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 26 6.3
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 26 6.3
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi... 26 6.3
At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger) fa... 26 6.3
At4g18160.1 68417.m02698 outward rectifying potassium channel, p... 26 6.3
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 26 6.3
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 26 6.3
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f... 25 8.3
At4g15545.1 68417.m02375 expressed protein 25 8.3
At3g56720.1 68416.m06309 expressed protein 25 8.3
>At4g12450.1 68417.m01970 expressed protein
Length = 277
Score = 30.3 bits (65), Expect = 0.29
Identities = 18/61 (29%), Positives = 27/61 (44%)
Frame = -1
Query: 313 PPGRCRAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 134
P CR RD+ T +PGT + +P P+ C R E + + P+R S R
Sbjct: 32 PSYSCRKNVRDVVNT----QPGTVKKNPKPDPSLRRLCSSRRPELDSNSHHPTRRSVSAR 87
Query: 133 S 131
+
Sbjct: 88 A 88
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 248 AWAPGLCGGPDVPAHGSAP 304
+W G CGGPDV A S P
Sbjct: 229 SWGRGFCGGPDVHAPQSLP 247
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = -3
Query: 311 SRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLL 198
S ++ + + H +HH P+H SE R +L+
Sbjct: 191 SSSLAAEQDNHNEHHHHYVPKHQVDEMRSEPARPSKLV 228
>At3g61940.1 68416.m06956 zinc transporter, putative similar to zinc
transporter ZAT [Arabidopsis thaliana]
gi|4206640|gb|AAD11757; similar to zinc transporter
ZnT-2 [Rattus norvegicus] gi|1256378|gb|AAB02775; member
of the cation diffusion facilitator (CDF) family, or
cation efflux (CE) family, PMID:11500563
Length = 334
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 284 GHQDHHRGPAPRHSEKHSASEADRAERLL 198
GH DH G HS H S +RAE+LL
Sbjct: 157 GH-DHGHGHDHGHSHDHGHSYGERAEQLL 184
>At2g07630.1 68415.m00881 hypothetical protein
Length = 458
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 76 QQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPGSKRSA-LSASDAECFS 243
Q L C + +K Y + DS++ + YS + + + P SKRS+ S S A+ FS
Sbjct: 369 QYLVCVENENKRYQMH--DSIDQCSLMLTYSEEPSEATTPSSKRSSDTSISPADNFS 423
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = -1
Query: 265 EARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 107
E +R + R P S +ER+ P+ ++ +R RR HH SI
Sbjct: 418 ERKRALEIKRDRTPTARATSKDTKERTPVPKSISRDARSSSLRRDAHHREASI 470
>At1g21630.1 68414.m02708 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain; ESTs gb|T44428 and gb|AA395440 come from this
gene
Length = 1218
Score = 27.1 bits (57), Expect = 2.7
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -2
Query: 315 PLPGGAEP*AGTSGPPQRP 259
P PGG P AG G P RP
Sbjct: 538 PHPGGLRPPAGPKGKPPRP 556
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -3
Query: 308 RAVQSREQGHQDHHRGPAPRHSEKHSASEADRAE 207
R+++ E GH+++ R + E+H E +AE
Sbjct: 550 RSIEVEETGHRNNARDYSATEEERHLVDETSQAE 583
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -3
Query: 317 HPSRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDAPS 171
H S+A ++RE+ D ++ A R ERL G D P+
Sbjct: 143 HKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPA 191
>At2g12100.1 68415.m01300 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At5g28270, At2g05450,
At1g45090, At2g16180, At2g06750
Length = 1224
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 266 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 165
R P+P H +H + E+LLP + P+ E
Sbjct: 681 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 714
>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1210
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 266 RGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 165
R P+P H +H + E+LLP + P+ E
Sbjct: 672 RVPSPSHQPEHGIPDGGNFEQLLPDPILSDPALE 705
>At5g45350.1 68418.m05567 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 177
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +2
Query: 254 APGLCGGPDVPAHGSAPP 307
APG G P P HG PP
Sbjct: 73 APGYGGYPPAPGHGGYPP 90
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 254 APGLCGGPDVPAHGSAPPGRG 316
APG G P P +G PP G
Sbjct: 64 APGYGGYPPAPGYGGYPPAPG 84
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Frame = -1
Query: 307 GRCRAVSRDIRTTTEARRPGT--ARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRR 134
G+ R I + R P T N R PK S S++ RH + PS W
Sbjct: 452 GKMRRPKSPITPSGYNRSPSTHIGHNYRSPKFN--SGGHYPGSQSSRHHSGPSPSRWQPS 509
Query: 133 SPHHFH 116
HH H
Sbjct: 510 HQHHHH 515
>At3g22600.1 68416.m02855 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 170
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 215 CRLRTPSVSRCAWAPGLCGG-PDVPAH--GSAPPGRG 316
C ++TP VSRC G G D PA S+ PG G
Sbjct: 95 CNVQTPPVSRCNTGGGGGGSTSDSPAESPNSSGPGNG 131
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/46 (30%), Positives = 17/46 (36%)
Frame = -1
Query: 259 RRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 122
RR + R P+ R ETPR WSR+ HH
Sbjct: 300 RREASNELNRTPRKQVQKKSALLRLETPRSYKNSRENEWSRQHNHH 345
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 298 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCR--ERSETPRHRNKPSRPVWSRRSP 128
R+ SR + + R P ++ + E+S R ERS +PR P P + SP
Sbjct: 206 RSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 298 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCR--ERSETPRHRNKPSRPVWSRRSP 128
R+ SR + + R P ++ + E+S R ERS +PR P P + SP
Sbjct: 206 RSHSRSLSASPARRSPRSSSPQKTSPAREVSPDKRSNERSPSPRRSLSPRSPALQKASP 264
>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
histidine kinase AHK2 [Arabidopsis thaliana]
gi|13537196|dbj|BAB40774
Length = 1176
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 82 LNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 198
+ SS S+ Y G G+ +K++ ++ G+ +S PG
Sbjct: 816 MQADSSTSRTYGGTGIGLSISKRLVELMQGEMGFVSEPG 854
>At4g35480.1 68417.m05042 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 200
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 206 AQLCRLRTPSVSRCAWAPGLCGGPDVPAHGSAPPGRG 316
A +C +V+RCAW L G + PP +G
Sbjct: 36 ALVCVAGLAAVARCAWLRRLTGVNPAAVGEAPPPNKG 72
>At4g18160.1 68417.m02698 outward rectifying potassium channel,
putative (KCO6) similar to kco1 [Arabidopsis thaliana]
gi|2230761|emb|CAA69158; member of the 2 pore, 4
transmembrane (2P/4TM) K+ channel family, PMID:11500563
Length = 436
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 204 ALSSVGFGRRVFLAVPGRR-ASVVVLMSLL 290
++++VG+G R F +PGR A++ +L+S L
Sbjct: 310 SVTTVGYGDRAFKTLPGRLFAAIWLLVSTL 339
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 196 RERSETPRHRNKPSRPVWSRRSPHH 122
R RS +P +R +PS RRSP +
Sbjct: 154 RRRSPSPVYRRRPSPDYTRRRSPEY 178
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 196 RERSETPRHRNKPSRPVWSRRSPHH 122
R RS +P +R +PS RRSP +
Sbjct: 180 RRRSPSPVYRRRPSPDYTRRRSPEY 204
>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
finger (C3HC4-type RING finger) family protein (BRCA1)
contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
Length = 1276
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -3
Query: 287 QGHQDHHRGPAPRHSEKHSASE 222
+G QD GP+ H EK S +E
Sbjct: 764 KGDQDQAHGPSDTHPEKRSPTE 785
>At4g15545.1 68417.m02375 expressed protein
Length = 337
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 251 RHSEKHSASEADRAERLLPGALRDAPSPE*TFSTCLVSTESTP 123
RHS S ++ E DAP P + S LVS +TP
Sbjct: 168 RHSSIQSQQASEAIEPAATDNENDAPKPSLSASLPLVSQTTTP 210
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Frame = -1
Query: 274 TTTEARRP---GTARNTRRPKPTELSACC------RERSETPRHRNKPSRPVWSRR 134
TTT R+P GT+R RR + + R +S P+H K S PV R+
Sbjct: 16 TTTAFRKPSNDGTSRKYRRRALADDGSSSSDGSPERNQSPNPKHSRKDSEPVHVRK 71
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,564,710
Number of Sequences: 28952
Number of extensions: 146973
Number of successful extensions: 571
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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