BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0966 (836 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 62 1e-10 SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 54 3e-08 SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 48 2e-06 SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po... 38 0.001 SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 28 1.9 SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 27 3.3 SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.8 >SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 571 Score = 61.7 bits (143), Expect = 1e-10 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%) Frame = +3 Query: 240 PKLPFANSELFYATISQSRRLTACDQGCKDVYEITFDVKD----SNFTFKAGDTIGIIPK 407 P PF+ +F A I R LT K V+ DV + + G + G++ Sbjct: 131 PHPPFS---VFPAPILDVRELTK-PGAVKRVFHFELDVSNYPLPEGEEWMVGGSFGVMAP 186 Query: 408 NPQVEVDFILNHLSLT-SQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXX 584 N + +VD +L L + QAD P +LL + PT + + T R++ Sbjct: 187 NNEEDVDELLQLLHINPDQADAP--VLLKTDGGRWPT-IWAEDTPRELVTTRRELLKWTV 243 Query: 585 XXXXXA--------ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPS 740 A ++ Y K+D ERQVL +L S+ G A+ + + + ++ + FPS Sbjct: 244 EFMSVAPKKQLIRLLAEYAKDDTERQVLLFLVSRLGQRAF-CDLRDHNVTLITLLKAFPS 302 Query: 741 CKPPIEVLLSYLPKLLPRPYSIVN 812 + P++ LL+ LP+L+PR YS+ N Sbjct: 303 VQLPLDHLLTVLPQLMPRWYSLSN 326 >SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 54.0 bits (124), Expect = 3e-08 Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 11/193 (5%) Frame = +3 Query: 267 LFYATISQSRRLTACDQGCKDVYEITFDVKD----SNFTFKAGDTIGIIPKNPQVEVDFI 434 +F A I R LT K Y + D+ +K G + GI+P N EV Sbjct: 164 IFAAPILDVRVLTN-PGAVKRTYNLCLDISKYPLLEGKDWKIGGSFGIMPPNSDAEV-LH 221 Query: 435 LNHLSLTSQADLPYTLLLGNKESKIPT-------HVPVKSTLRQVXXXXXXXXXXXXXXX 593 L HL Q +L T +L + PT S Sbjct: 222 LAHLLKIPQHELYVTKVLRTNGGRWPTIWGEDKPRCLYTSLYHIFKWCSDFISKPPTKSL 281 Query: 594 XXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSY 773 ++ +T E+ VL LS +Y + + DI FPSC PP++ L+S Sbjct: 282 IRLLAEHTLNPVEKSVLLALSDFRQDESYCRICTQSCVTLPDILEAFPSCHPPVDHLISA 341 Query: 774 LPKLLPRPYSIVN 812 LP+L+PR YSI N Sbjct: 342 LPQLMPRWYSISN 354 >SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 678 Score = 47.6 bits (108), Expect = 2e-06 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 4/195 (2%) Frame = +3 Query: 243 KLPFANSELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVE 422 K P + + F++ S R L G ++ + D+ DS ++ GD I P NP Sbjct: 260 KAPRSQANPFFS--SPVRSLELFKSGSRNCLHLELDIADSGMRYQTGDYASICPMNPSQA 317 Query: 423 VDFILNHLSLTSQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXA 602 VD +L L L + D + + K P P +T V Sbjct: 318 VDDLLEVLGLKEKRDTVIIVKPIDTLDKAPVLSP--TTYDTVFRYYYEICGIVSRQLLSF 375 Query: 603 ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLF----PSCKPPIEVLLS 770 I+ + +Q LE L + +K ++++ +N+ + P K P +LL Sbjct: 376 IAPFAPTPESKQELEKLGN--DYDYFKKNVVDLHLNLAQVLRRVSPDAPFTKLPFSMLLE 433 Query: 771 YLPKLLPRPYSIVNS 815 + + PR YSI +S Sbjct: 434 NMAHMKPRYYSISSS 448 >SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 558 Score = 38.3 bits (85), Expect = 0.001 Identities = 37/179 (20%), Positives = 68/179 (37%) Frame = +3 Query: 276 ATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVEVDFILNHLSLT 455 AT+ ++R++ +DV + F + + +K GD + P N + V+ + + Sbjct: 178 ATLVHNKRISNIKHW-QDVRHLAFKIPNFE-RWKPGDVAVLYPWNDDMSVNSFIECMGWE 235 Query: 456 SQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNER 635 S P + E K+P + + V A S ++ + Sbjct: 236 SIKYSPLIISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFFEMA-SHFSNNKMHK 294 Query: 636 QVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVN 812 + L+ SS + Y + + +L+ F S + PIE L P + R YSI N Sbjct: 295 ERLQEFSSYKNIDDYYDYTTRPRRTVLETLQEFKSVQIPIEYALDAFPVIRGRQYSIAN 353 >SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 649 Score = 27.9 bits (59), Expect = 1.9 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 5/145 (3%) Frame = +3 Query: 285 SQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQA 464 +Q RRL C + EI D+ + F GD + ++ K + V +L H Sbjct: 158 AQLRRLIKCQFVAE---EIDNDIAITAFRLLVGDLL-VLFKAVNIGVINVLEHYFEMGHH 213 Query: 465 DLPYTLLLG----NKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKE-DN 629 D +L + N+ I ++ +L V ++ Y + D Sbjct: 214 DAAQSLRIYKTFVNQTEDIINYLSTARSLEFVTKFPVPNIKHAPISLTASLEEYLNDPDF 273 Query: 630 ERQVLEYLSSKEGSTAYKTHILNKQ 704 E +YL +K GS +T ILN++ Sbjct: 274 EENRKQYLQNKSGSPVEETAILNRK 298 >SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr 2|||Manual Length = 955 Score = 27.1 bits (57), Expect = 3.3 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Frame = -2 Query: 685 VLYAVDPSLLLKYSSTCLSLSSFVYLDIANRNNFL---SKHRRSKQ 557 +++A DPSL +KY S L + + R FL SKH S + Sbjct: 880 LVFAADPSLCIKYMSNVLDQLPAMTIGQEEREKFLANFSKHCTSSE 925 >SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1073 Score = 26.2 bits (55), Expect = 5.8 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Frame = +2 Query: 701 TNKHFGYI-HTVSILQATNRSIIILF-TEATA*TIF 802 T FGY+ H++S L+ +NR++ +L + +T T++ Sbjct: 604 TGFQFGYLPHSISYLRKSNRAVYVLISSNSTLLTVY 639 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,418,445 Number of Sequences: 5004 Number of extensions: 73662 Number of successful extensions: 212 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 202 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 211 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 412451140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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