Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0966
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    62   1e-10
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    54   3e-08
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    48   2e-06
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    38   0.001
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    28   1.9  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   3.3  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.8  

>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%)
 Frame = +3

Query: 240 PKLPFANSELFYATISQSRRLTACDQGCKDVYEITFDVKD----SNFTFKAGDTIGIIPK 407
           P  PF+   +F A I   R LT      K V+    DV +        +  G + G++  
Sbjct: 131 PHPPFS---VFPAPILDVRELTK-PGAVKRVFHFELDVSNYPLPEGEEWMVGGSFGVMAP 186

Query: 408 NPQVEVDFILNHLSLT-SQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXX 584
           N + +VD +L  L +   QAD P  +LL     + PT +  + T R++            
Sbjct: 187 NNEEDVDELLQLLHINPDQADAP--VLLKTDGGRWPT-IWAEDTPRELVTTRRELLKWTV 243

Query: 585 XXXXXA--------ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPS 740
                A        ++ Y K+D ERQVL +L S+ G  A+   + +  + ++ +   FPS
Sbjct: 244 EFMSVAPKKQLIRLLAEYAKDDTERQVLLFLVSRLGQRAF-CDLRDHNVTLITLLKAFPS 302

Query: 741 CKPPIEVLLSYLPKLLPRPYSIVN 812
            + P++ LL+ LP+L+PR YS+ N
Sbjct: 303 VQLPLDHLLTVLPQLMPRWYSLSN 326


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 53/193 (27%), Positives = 74/193 (38%), Gaps = 11/193 (5%)
 Frame = +3

Query: 267 LFYATISQSRRLTACDQGCKDVYEITFDVKD----SNFTFKAGDTIGIIPKNPQVEVDFI 434
           +F A I   R LT      K  Y +  D+          +K G + GI+P N   EV   
Sbjct: 164 IFAAPILDVRVLTN-PGAVKRTYNLCLDISKYPLLEGKDWKIGGSFGIMPPNSDAEV-LH 221

Query: 435 LNHLSLTSQADLPYTLLLGNKESKIPT-------HVPVKSTLRQVXXXXXXXXXXXXXXX 593
           L HL    Q +L  T +L     + PT            S                    
Sbjct: 222 LAHLLKIPQHELYVTKVLRTNGGRWPTIWGEDKPRCLYTSLYHIFKWCSDFISKPPTKSL 281

Query: 594 XXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSY 773
              ++ +T    E+ VL  LS      +Y        + + DI   FPSC PP++ L+S 
Sbjct: 282 IRLLAEHTLNPVEKSVLLALSDFRQDESYCRICTQSCVTLPDILEAFPSCHPPVDHLISA 341

Query: 774 LPKLLPRPYSIVN 812
           LP+L+PR YSI N
Sbjct: 342 LPQLMPRWYSISN 354


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 4/195 (2%)
 Frame = +3

Query: 243 KLPFANSELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVE 422
           K P + +  F++  S  R L     G ++   +  D+ DS   ++ GD   I P NP   
Sbjct: 260 KAPRSQANPFFS--SPVRSLELFKSGSRNCLHLELDIADSGMRYQTGDYASICPMNPSQA 317

Query: 423 VDFILNHLSLTSQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXA 602
           VD +L  L L  + D    +   +   K P   P  +T   V                  
Sbjct: 318 VDDLLEVLGLKEKRDTVIIVKPIDTLDKAPVLSP--TTYDTVFRYYYEICGIVSRQLLSF 375

Query: 603 ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLF----PSCKPPIEVLLS 770
           I+ +      +Q LE L +      +K ++++  +N+  +        P  K P  +LL 
Sbjct: 376 IAPFAPTPESKQELEKLGN--DYDYFKKNVVDLHLNLAQVLRRVSPDAPFTKLPFSMLLE 433

Query: 771 YLPKLLPRPYSIVNS 815
            +  + PR YSI +S
Sbjct: 434 NMAHMKPRYYSISSS 448


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 37/179 (20%), Positives = 68/179 (37%)
 Frame = +3

Query: 276 ATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVEVDFILNHLSLT 455
           AT+  ++R++      +DV  + F + +    +K GD   + P N  + V+  +  +   
Sbjct: 178 ATLVHNKRISNIKHW-QDVRHLAFKIPNFE-RWKPGDVAVLYPWNDDMSVNSFIECMGWE 235

Query: 456 SQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNER 635
           S    P  +     E K+P    + +    V                 A S ++     +
Sbjct: 236 SIKYSPLIISSNVAERKLPWFPNILNVFNLVKYVLSIHSVPSRTFFEMA-SHFSNNKMHK 294

Query: 636 QVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVN 812
           + L+  SS +    Y  +    +  +L+    F S + PIE  L   P +  R YSI N
Sbjct: 295 ERLQEFSSYKNIDDYYDYTTRPRRTVLETLQEFKSVQIPIEYALDAFPVIRGRQYSIAN 353


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 5/145 (3%)
 Frame = +3

Query: 285 SQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQA 464
           +Q RRL  C    +   EI  D+  + F    GD + ++ K   + V  +L H       
Sbjct: 158 AQLRRLIKCQFVAE---EIDNDIAITAFRLLVGDLL-VLFKAVNIGVINVLEHYFEMGHH 213

Query: 465 DLPYTLLLG----NKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKE-DN 629
           D   +L +     N+   I  ++    +L  V                 ++  Y  + D 
Sbjct: 214 DAAQSLRIYKTFVNQTEDIINYLSTARSLEFVTKFPVPNIKHAPISLTASLEEYLNDPDF 273

Query: 630 ERQVLEYLSSKEGSTAYKTHILNKQ 704
           E    +YL +K GS   +T ILN++
Sbjct: 274 EENRKQYLQNKSGSPVEETAILNRK 298


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 955

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 685  VLYAVDPSLLLKYSSTCLSLSSFVYLDIANRNNFL---SKHRRSKQ 557
            +++A DPSL +KY S  L     + +    R  FL   SKH  S +
Sbjct: 880  LVFAADPSLCIKYMSNVLDQLPAMTIGQEEREKFLANFSKHCTSSE 925


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/36 (33%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 701 TNKHFGYI-HTVSILQATNRSIIILF-TEATA*TIF 802
           T   FGY+ H++S L+ +NR++ +L  + +T  T++
Sbjct: 604 TGFQFGYLPHSISYLRKSNRAVYVLISSNSTLLTVY 639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,445
Number of Sequences: 5004
Number of extensions: 73662
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)