Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0966
(836 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875... 60 2e-09
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120... 42 6e-04
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 40 0.002
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101... 30 2.6
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959... 29 4.6
03_02_0249 - 6792210-6792215,6794332-6794607,6794692-6795180,679... 28 8.0
>08_01_0889 +
8753877-8754236,8754995-8755054,8755174-8755250,
8755481-8755622,8755736-8755772,8755852-8755921,
8756021-8756212,8756321-8756413,8756545-8756773,
8756861-8756944,8757041-8757192,8757279-8757375,
8757576-8757725,8757813-8757890,8757982-8758104,
8758169-8758315,8758418-8758472,8758807-8758874
Length = 737
Score = 60.1 bits (139), Expect = 2e-09
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Frame = +3
Query: 306 ACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNP-QV--EVDFILNHLS---LTSQAD 467
A D+ C + FD+ + T++ GD +G+ +N +V E + +L + T AD
Sbjct: 326 ASDRSCT---HLEFDIAGTGLTYETGDHVGVYTENCLEVVEEAERLLGYSPEAFFTIHAD 382
Query: 468 LPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLE 647
LG P P+ T+R A++ Y + E L
Sbjct: 383 KEDGTPLGGGSLAPPFPSPI--TVRNALARYADLLNSPKKSALVALATYASDSTEADRLR 440
Query: 648 YLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSYL-PKLLPRPYSIVNS 815
+L+S G Y ++ Q ++L++ FPS KPP+ V + + P+L PR YSI +S
Sbjct: 441 FLASPAGKDEYAQWVVASQRSLLEVMAEFPSAKPPLGVFFAAVAPRLQPRYYSISSS 497
>09_06_0260 -
21911358-21911438,21911715-21911828,21911911-21912033,
21912342-21912419,21912498-21912647,21913505-21913601,
21913679-21913860,21913899-21913982,21914243-21914303,
21914414-21914506,21914588-21914782,21914937-21915006,
21915536-21915572,21915654-21915737,21915828-21915885,
21916008-21916084,21916185-21916244,21916325-21916687
Length = 668
Score = 41.9 bits (94), Expect = 6e-04
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 678 YKTHILNKQINILDIFTLFPSCKPPIEVLLSYL-PKLLPRPYSIVNS 815
Y I++ Q ++L++ T FPS KPP+ V + + P+L PR YSI +S
Sbjct: 407 YSQWIVSSQRSLLEVMTEFPSAKPPLGVFFAAIAPRLQPRYYSISSS 453
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/77 (29%), Positives = 39/77 (50%)
Frame = +3
Query: 603 ISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSYLPK 782
+S + ++E++ L+Y +S EG + + IL++ FPS + P E L+ P
Sbjct: 298 MSFFATAEHEKEKLQYFASPEGRDDLYQYNQKEGRTILEVLDDFPSVQMPFEWLVQLTPP 357
Query: 783 LLPRPYSIVNSYLEDSN 833
L R +SI +S L N
Sbjct: 358 LKKRAFSISSSPLAKPN 374
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Frame = +3
Query: 240 PKLPFANS--ELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNP 413
P L F N+ E Y S R + +DV + S T++ GD + I+P
Sbjct: 217 PSLQFYNNDKEPHYMLQMVSNRCLTKENSDRDVRHFELENPSSGITYQVGDALEILPSQS 276
Query: 414 QVEVDFILNHLSL 452
VD + L
Sbjct: 277 PSAVDSFIERCKL 289
>01_06_1516 -
37908284-37908497,37909666-37909733,37909809-37910186,
37910315-37910393,37910433-37910749
Length = 351
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 282 ISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPK 407
+S+++RLT C +G V + TF + +N T + D + I+P+
Sbjct: 40 VSKNKRLTFCVEGNISVGKTTFLQRIANETIELRDLVEIVPE 81
>11_06_0689 -
26294961-26294976,26295271-26295414,26295506-26295909,
26296112-26296261,26296334-26296497,26296526-26296836,
26296948-26297084,26297276-26297416,26297821-26297867,
26297977-26298072,26298168-26298249,26298332-26298472,
26298607-26298702,26298809-26298877,26298959-26299030,
26299201-26299368,26299577-26299711,26299792-26299958,
26301213-26301369
Length = 898
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 601 RYRDIQKKITKDKYSNI*AARKDLQHIKLTY 693
+Y D Q+K KD SN+ + ++HIKL Y
Sbjct: 325 KYFDQQQKHIKDLKSNLATMKSGMEHIKLQY 355
>03_02_0249 -
6792210-6792215,6794332-6794607,6794692-6795180,
6795832-6795900,6797316-6797403,6798193-6798224,
6799277-6799308,6799412-6799646
Length = 408
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = +3
Query: 126 QALPEKTVFTLPTLTKVISLKLEYRVGDANTTIYNGPDPKLPFANSELFYATISQSRRLT 305
Q E T + PT+T + LKLE I + P + + SE F S SRR
Sbjct: 55 QGSNESTTQSQPTVTVIEDLKLEIDCQHVKKNIAHSPGQQC--SPSERFDEWKSSSRRRP 112
Query: 306 ACD 314
CD
Sbjct: 113 KCD 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,710,931
Number of Sequences: 37544
Number of extensions: 384066
Number of successful extensions: 776
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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