Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0966
         (836 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)         128   7e-30
SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 30   2.0  
SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)              29   6.2  

>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
          Length = 724

 Score =  128 bits (308), Expect = 7e-30
 Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 4/207 (1%)
 Frame = +3

Query: 216 TTIYNGPDPKLPFANSELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIG 395
           +T+ +      P A S +  ATI  +RRLTA D   K   EIT D+  S + ++AG++  
Sbjct: 274 STVPHQAGASFPGAASPITMATIVGARRLTA-DDAMKKALEITLDISQSGWEYEAGNSFN 332

Query: 396 IIPKNPQVEVDFILNHLSLTSQADLPYTL--LLGNKE--SKIPTHVPVKSTLRQVXXXXX 563
           I   N + EVD I+  L LTS A +PY +  + G K+  + IP ++P   T+++      
Sbjct: 333 IYCPNDEGEVDAIIERLGLTSMAQVPYDIQVMSGTKKKTASIPNYIPQPYTIKESLLTCL 392

Query: 564 XXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSC 743
                        +  +T ++NE++ L+ L SK+G+  Y   +    +++L++ T FPSC
Sbjct: 393 DIRMVPRKAFLRTLVEFTHDNNEQRRLQELCSKQGADEYCRFVREPSLSLLELLTAFPSC 452

Query: 744 KPPIEVLLSYLPKLLPRPYSIVNSYLE 824
            PP E LL +LP+L PRPYSI +S LE
Sbjct: 453 FPPFERLLEHLPRLSPRPYSISSSPLE 479


>SB_25084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 47/193 (24%), Positives = 77/193 (39%), Gaps = 4/193 (2%)
 Frame = +3

Query: 249 PFANSELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIPKNPQVEVD 428
           P+     F A I  +R L     G +    I  D+  S   + AGD + + P N    +D
Sbjct: 297 PYDAKNPFLAPIVINRELHK--GGDRSCMHIELDITGSGIKYDAGDHVAVYPTN---NLD 351

Query: 429 FILNHLSLTSQADLPYTLLLGN-KESKIPTH-VPVKSTLRQVXXXXXXXXXXXXXXXXXA 602
            +     L +  DL     L N  E     H  P  +T R                    
Sbjct: 352 LVEKFSQLLN-VDLDTVFSLDNVDEDASKKHPFPCPTTYRTALMHYVDITSTVKTHVLRE 410

Query: 603 ISRYTKEDNERQVLEYLS--SKEGSTAYKTHILNKQINILDIFTLFPSCKPPIEVLLSYL 776
           ++ Y ++  E++ L  +S  ++E    Y   ++    +I+ +    PS KPP++ +L  L
Sbjct: 411 LAEYARDHEEKEFLMAISDSTEEAKKKYNEWVIQPHRHIVAVLEDMPSLKPPLDHILELL 470

Query: 777 PKLLPRPYSIVNS 815
           P+L  R YSI +S
Sbjct: 471 PRLQCRYYSISSS 483


>SB_19908| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
 Frame = -3

Query: 693 ICEFYML*ILPCCLNIRVLVFRYLLLYISISLTGTTF*ANTED--------PNNQSTLVS 538
           I  FY L + PCCL   V +F Y  +YI+I        A+           P++ S + +
Sbjct: 136 IITFYTL-VAPCCL---VTIFCYSRIYIAIKKNSPMRVASPSQKRKPSPRKPDSNSAVET 191

Query: 537 TLI*QVHVLVFYFLYSLKATCKVNLLV 457
            +   + V+VF++  SL     +NL+V
Sbjct: 192 RVTIMIFVVVFWYFTSLAPFNVINLMV 218


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 621 EDNERQV-LEYLSSKEGSTAY-KTHILNKQINILDIFTLFPSCKPPIEVLLSYLPKLLPR 794
           ED + ++ +E+  SK+G   Y +  +L  Q N + I    P   P IEV+L+ +PK  P+
Sbjct: 651 EDKDGKIGIEFPESKDGKLVYDRNFLLQFQFNPICIEK--PENLPDIEVVLNTMPKGPPK 708

Query: 795 PYS 803
            ++
Sbjct: 709 SFN 711


>SB_59567| Best HMM Match : Cyclin_N (HMM E-Value=3.3e-07)
          Length = 282

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -3

Query: 720 YPKCLFVCLICEFYML*ILPCCLNIRVLVFRYLLLYIS 607
           +P  +   L CEFY+L +L CCL I    +R L  Y+S
Sbjct: 129 FPYRMNQVLECEFYLLEMLDCCL-IIYHPYRPLTQYVS 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,821,009
Number of Sequences: 59808
Number of extensions: 481352
Number of successful extensions: 998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)