Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0966
         (836 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    89   5e-18
Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical pr...    78   9e-15
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    46   3e-05
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    46   3e-05
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.8  
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele...    29   5.4  
Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 2/199 (1%)
 Frame = +3

Query: 225 YNGPDPKLPFANSELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFTFKAGDTIGIIP 404
           Y  P P     N  L    I+        D+ C+    I F V+ S   ++AGD + + P
Sbjct: 260 YERPRPPFDVKNPYLATVAINDELHTEHSDRSCR---HIEFSVEGSRIRYEAGDHLAVFP 316

Query: 405 KNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKIPTHVPVKSTLRQVXXXXXXXXXXXX 584
            N  V VD ++N L      D  + L+  ++++      P  +T R              
Sbjct: 317 TNDPVLVDRLINMLQF--DPDHAFRLVNVDEDASKRHPFPCPTTFRTALSHYVDICAPVK 374

Query: 585 XXXXXAISRYTKEDNERQVLEYLSS--KEGSTAYKTHILNKQINILDIFTLFPSCKPPIE 758
                AIS Y  +D E++ L  LS+  +EG   Y  +I+ ++ +I+D+ T   +CKPPIE
Sbjct: 375 SHVLKAISEYCTDDTEKEFLNKLSTANEEGLKEYARYIVKERRSIVDVLTDQKTCKPPIE 434

Query: 759 VLLSYLPKLLPRPYSIVNS 815
            LL  LP+L  R YSI +S
Sbjct: 435 YLLELLPRLQARYYSIASS 453


>Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical
           protein C01G6.6a protein.
          Length = 682

 Score = 77.8 bits (183), Expect = 9e-15
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
 Frame = +3

Query: 339 ITFDVKD--SNFTFKAGDTIGIIPKNPQVEVDFILNHLSLTSQADLPYTLLLGNKESKI- 509
           IT D  D  +   ++ GD I     NP +EV+FIL    +   AD    L +  K  KI 
Sbjct: 298 ITVDFGDHAAELQYEPGDAIYFCVPNPALEVNFILKRCGVLDIADQQCELSINPKTEKIN 357

Query: 510 ---PTHVPVKSTLRQVXXXXXXXXXXXXXXXXXAISRYTKEDNERQVLEYLSSKEGSTAY 680
              P HV   +TLR +                  ++  T + NE++ L  L S +G   +
Sbjct: 358 AQIPGHVHKITTLRHMFTTCLDIRRAPGRPLIRVLAESTSDPNEKRRLLELCSAQGMKDF 417

Query: 681 KTHILNKQINILDIFTLFPSCKPPIEVLLSYLPKLLPRPYSIVNSY 818
              +    +++ D+   FP+ KPP++ L+  LP+L+PRPYS ++SY
Sbjct: 418 TDFVRTPGLSLADMLFAFPNVKPPVDRLIELLPRLIPRPYS-MSSY 462


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
 Frame = +3

Query: 264 ELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFT---FKAGDTIGIIPKNPQVEVDFI 434
           + F   + ++RRLT+ +   +D   + F++ D N +   F+ GD + + P NP+  V   
Sbjct: 205 DYFPLKVLKNRRLTSAEH-FQDTRLVDFEISDRNRSKMGFQPGDVLMVRPYNPEETVKIA 263

Query: 435 LNHLSLT-SQADLPYTLLLGNKESKIPTH--VPVKSTLRQVXXXXXXXXXXXXXXXXXAI 605
           +  L LT  Q   P  ++  ++ SK P +  V  K+TL                     +
Sbjct: 264 IEALGLTEEQLKKPLKIVKNDRFSKNPPNFLVGTKTTLLTCLQRYFDLQQVPKRSFFEML 323

Query: 606 SRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPI--EVLLSYLP 779
             Y+    E++ L+ L+S EG   Y  +    +    +    F +    +  + L   L 
Sbjct: 324 GYYSTNPPEKERLQELASPEGLDDYLDYANRSRRTTAEALRDFVATSKNLKPDYLFEILT 383

Query: 780 KLLPRPYSIVNS 815
            + PR +SI ++
Sbjct: 384 TIRPRAFSIASA 395


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 8/192 (4%)
 Frame = +3

Query: 264 ELFYATISQSRRLTACDQGCKDVYEITFDVKDSNFT---FKAGDTIGIIPKNPQVEVDFI 434
           + F   + ++RRLT+ +   +D   + F++ D N +   F+ GD + + P NP+  V   
Sbjct: 205 DYFPLKVLKNRRLTSAEH-FQDTRLVDFEISDRNRSKMGFQPGDVLMVRPYNPEETVKIA 263

Query: 435 LNHLSLT-SQADLPYTLLLGNKESKIPTH--VPVKSTLRQVXXXXXXXXXXXXXXXXXAI 605
           +  L LT  Q   P  ++  ++ SK P +  V  K+TL                     +
Sbjct: 264 IEALGLTEEQLKKPLKIVKNDRFSKNPPNFLVGTKTTLLTCLQRYFDLQQVPKRSFFEML 323

Query: 606 SRYTKEDNERQVLEYLSSKEGSTAYKTHILNKQINILDIFTLFPSCKPPI--EVLLSYLP 779
             Y+    E++ L+ L+S EG   Y  +    +    +    F +    +  + L   L 
Sbjct: 324 GYYSTNPPEKERLQELASPEGLDDYLDYANRSRRTTAEALRDFVATSKNLKPDYLFEILT 383

Query: 780 KLLPRPYSIVNS 815
            + PR +SI ++
Sbjct: 384 TIRPRAFSIASA 395


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = -2

Query: 754 IGGLQDGNSVNISKMFICLFNM*VLYAVDPSLLLKYSSTCLSLSSFVYLDIANR 593
           I  L  G  +NI  ++  LF    +YA   S  L YS+ C    S ++LDI  R
Sbjct: 36  IAYLIPGGILNILLLYTILFKNSEIYA-SSSFFLIYSTDCFVSFSMIFLDIIGR 88


>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
            RNA polymeraseII largest subunit (ama-1 IV) gene,
            complete cds. ).
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 159  PTLTKVISLKLEYRVGDANTTIYNGPDPK 245
            P   K +  KLE+     NT IY  PDPK
Sbjct: 1151 PEKAKDVLCKLEHTTVTCNTAIYYDPDPK 1179


>Z72508-8|CAA96640.2|  366|Caenorhabditis elegans Hypothetical
           protein F28H7.9 protein.
          Length = 366

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 38  VVKGCFLNIMNN*WSFQKHGSDSISKRYFASTTRKNCIYFTYINESDFF 184
           +V  C + + N+  + + HG  S+S+R+  S   K C + + I  S  F
Sbjct: 192 IVTKCNIRLHNSYSTLEHHGLYSLSERFQVSENIKTCQWLSRIQGSILF 240


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = +2

Query: 95  GSDSISKRYFASTTRKNCIYFTYINESDFFETRIQSGRCK 214
           GS + S R++  +    CI F+Y+ +   F   +    C+
Sbjct: 310 GSGNTSPRFYYDSREGRCIQFSYLGQGGNFNNFLSQDHCE 349


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,367,948
Number of Sequences: 27780
Number of extensions: 388428
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)