Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0964
         (759 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.6  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   4.6  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   6.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     22   6.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 609  SEALNTTLKPAVRYHLRTV 553
            +EA   TL+PA  YH+R V
Sbjct: 954  TEAGVFTLRPATTYHIRIV 972


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 461 YLLPVIGHIVSSNYNPLNRNNQSNRQIYVRIS 366
           ++LP+I H + S+ NP N  N   + + V +S
Sbjct: 212 FMLPII-HNLLSDKNPPNTENNCAQPVVVIMS 242


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -2

Query: 689 TLKLAGILLWSV 654
           +L LAG+++WS+
Sbjct: 352 SLNLAGVMIWSI 363


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 172 LDLVFRY*ISFLDLD*VRLQGYKHLPWVSNL 264
           LD++ R  +S L+   +   GY H P +S++
Sbjct: 84  LDIMMRRDMSRLEKSPLLANGYNHSPHLSHM 114


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,008
Number of Sequences: 336
Number of extensions: 3611
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)