Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0964
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces pombe...    26   6.7  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    25   8.9  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    25   8.9  

>SPAC2E1P5.02c |mug109||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 740 PSIGVLGNCGARLIVVLTLKLAGILLWS 657
           P   + G C   LIV++ L   G L WS
Sbjct: 112 PKYSIPGVCAVTLIVIMFLAPVGRLFWS 139


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -1

Query: 627 STEELVSEALNTTLKPAVRYHL 562
           STE+L SE L   +KP V  HL
Sbjct: 201 STEDLRSEILEKIIKPTVPAHL 222


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 436 ICPITGSKYHYHLRTKVHCWT*VFSEELRTK 528
           IC      + +H R+KV  W  VF EE+  K
Sbjct: 40  ICGENARAHGHHFRSKVRMW--VFEEEIEYK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,039
Number of Sequences: 5004
Number of extensions: 62271
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)