Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0963
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.7  
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz...    28   1.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   3.0  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   4.0  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   4.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   7.0  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    26   7.0  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    25   9.3  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 266 NLRKKVENILPRLFDNITDYFEGNDSAV 349
           NLR+K   IL RL     D F  N+S V
Sbjct: 462 NLRRKKARILKRLMQESNDTFSANESTV 489


>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/70 (21%), Positives = 33/70 (47%)
 Frame = +2

Query: 101 KQLAKFHALSFALRERKPEYYESKIKTIPSRLNLGNEWNGFVKSMQALTLNFLNDNLRKK 280
           +++ K  ++     E++ +  E  +K +P   N   +WNG V +   L+ +++ +  R  
Sbjct: 247 RRMPKVFSIPLPNAEQRRKILELYLKKVPLEANF--DWNGVVNATAGLSGSYIKEVCRSA 304

Query: 281 VENILPRLFD 310
           +      LFD
Sbjct: 305 LSVPRRELFD 314


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 560 QNFLEYFDISIESVYSKTDFD 622
           Q+F+E  D+ ++  +SK DFD
Sbjct: 650 QHFIELIDLHVQDEFSKEDFD 670


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 227 KSMQALTLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEID 406
           K++Q L  N   D+ ++   N L    +        N++ V  + HGD +P+N+++ E  
Sbjct: 148 KALQYLHENVAGDSPKQPEVNDLIMFDEPQVPQNTSNNNLVSYI-HGDIKPDNLLLHENS 206

Query: 407 GEI 415
            EI
Sbjct: 207 REI 209


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 451 LWMSN-NRFLILRIHGNRQRIQKSSFNTPENPILRYNAKFS 570
           LWMS  NR L    HG+ + I +S+ +TP NP+  YN   S
Sbjct: 537 LWMSVLNRLLWKNEHGSPKDI-RSAASTPANPV--YNRSSS 574


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 101 KQLAKFHALSFALRERKPEYYESKIKTIPSRLNLGNEWNGF-VKSMQALTLNFLND 265
           +QL+KF ++   LRE KP    SK+K +   +    + +GF +     +T++FL D
Sbjct: 266 RQLSKFASVQDRLREWKPS-VASKLKRLSCLVISMLDVDGFRIDKATQMTVDFLVD 320


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 572 EYFDISIESVYSKTDFDNDYKKNLITGLIVTILYCPFMFVDEN 700
           EYF   I S+Y ++ F        +T LIV  +Y     + EN
Sbjct: 538 EYFQSQITSLYQESSFQKRLLMLQLTVLIVLTVYMAVSRLPEN 580


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 377 PNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFLYFVFTATD 502
           PN ++    DG +      D+ L  Y C I+D  +    ATD
Sbjct: 166 PNTLLKYMTDGMLLREAMTDHMLSRYSCIILDEAHERTLATD 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,186,602
Number of Sequences: 5004
Number of extensions: 66333
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)