Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0963
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 32 0.59
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940... 30 1.8
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 29 3.2
03_04_0092 + 17255548-17256046,17257838-17258262 29 4.2
02_01_0178 - 1223725-1223736,1223900-1224025,1224404-1224649,122... 29 5.5
05_06_0207 + 26377836-26378201,26379785-26379906,26380025-263802... 28 7.3
05_04_0288 + 19839597-19839821,19841882-19842107,19842494-198425... 28 7.3
04_03_0201 - 12586324-12587131,12590080-12591512 28 7.3
11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617 28 9.6
10_08_0459 + 18092656-18092724,18092827-18092886,18092970-180930... 28 9.6
05_01_0356 + 2785410-2785670,2785843-2785960,2786800-2786891,278... 28 9.6
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 31.9 bits (69), Expect = 0.59
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 8/55 (14%)
Frame = +2
Query: 206 NEWNGFVK---SMQALTLNF----LND-NLRKKVENILPRLFDNITDYFEGNDSA 346
NEWNG K SM+ L++++ LN +++ +E + + + + DYF GN A
Sbjct: 289 NEWNGSTKTFVSMEELSVDYERGYLNSADVKMALEKAINNILEPVRDYFSGNTKA 343
>03_06_0555 -
34693067-34693196,34693450-34693688,34693956-34694033,
34694057-34694131,34694667-34694831,34695101-34695151,
34695250-34695300,34695462-34695533,34695736-34695948,
34696064-34696214,34696376-34696490,34696665-34696748,
34696841-34696964,34697064-34697145,34697238-34697299,
34697787-34697840,34697944-34698147
Length = 649
Score = 30.3 bits (65), Expect = 1.8
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +2
Query: 257 LNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEIDGEISETIPID 436
L L+ K + + L I + EG V CL HG + ++K + G I + D
Sbjct: 324 LQKKLKAKKKRLTEPLLVRIMNTREGLKIGVSCLKHGSAKDRKKIIKSLKGHIMKLALSD 383
Query: 437 YQ--LIYYGCPIIDFLYFVFTATDKEFRRAHLTHLKTLYYD 553
Y L+ ++D V +E + HLK L +D
Sbjct: 384 YGCILLVAILSVVDDTKLVTKIVIQELAK----HLKQLIFD 420
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +2
Query: 245 TLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRP-----NNIMMKEIDG 409
TL L+D++ K E IT++FEG D C FR ++IMM+ D
Sbjct: 172 TLYCLHDDVYVKAEEDKADYIGRITEFFEGTDHCHYFTCRWFFRAEDTVISSIMMENADD 231
Query: 410 E 412
E
Sbjct: 232 E 232
>03_04_0092 + 17255548-17256046,17257838-17258262
Length = 307
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 278 KVENILPRLFDN-ITDYFEGNDSAVCCLCHGDFR-PNNIMMKEIDGEISETI 427
KVE R D + Y +G D ++ C+CHG F P + G++S +
Sbjct: 243 KVEGPNGRKIDGFLYKYRKGEDVSIMCVCHGKFHSPAEFVKHAGGGDVSNPL 294
>02_01_0178 -
1223725-1223736,1223900-1224025,1224404-1224649,
1224731-1224922,1225059-1225138,1225233-1226826
Length = 749
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 5 AQAIILENLAKKGYKTAHRMDVVSLE--YAEMAIKQLAKFHALSFALRERKPEYYES 169
A+A L + T HR++ S E ++A+K L F L R R PEY E+
Sbjct: 446 AEAAFLMVVVFSAEVTKHRLNAKSSEGFQPDVAVKILVSFSCLEHLRRLRLPEYTEA 502
>05_06_0207 +
26377836-26378201,26379785-26379906,26380025-26380220,
26380642-26380759,26380869-26380916,26380995-26381095,
26381178-26381285
Length = 352
Score = 28.3 bits (60), Expect = 7.3
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = +2
Query: 359 CHGDFRPNNIMMKEIDGEISETIPIDYQLIYYGCPIIDFL-YFVFTATDKEFRRAHLTHL 535
CH D + NIM ID E IDY+ +G D +F A D + H+
Sbjct: 207 CHNDLQYGNIM---IDEETKLLTIIDYEYASFGPVAYDIANHFCEMAADYHSEKPHILDY 263
Query: 536 KTLYYDT 556
T Y DT
Sbjct: 264 -TKYPDT 269
>05_04_0288 +
19839597-19839821,19841882-19842107,19842494-19842582,
19845184-19845387,19845463-19845717,19845796-19846011,
19846611-19846766,19846880-19847039,19847702-19847788,
19847789-19847940,19848006-19848143,19848714-19848788,
19849166-19849444
Length = 753
Score = 28.3 bits (60), Expect = 7.3
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 584 ISIESVYSKT--DFDNDYKKNLITGLIVTILYCPFMF 688
I +E +Y D D+DY++ ++ LI ++ + F+F
Sbjct: 482 IELEEIYKSVHMDIDSDYERRILNDLIDSVTFDNFLF 518
>04_03_0201 - 12586324-12587131,12590080-12591512
Length = 746
Score = 28.3 bits (60), Expect = 7.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 353 CLCHGDFRPNNIMMKE 400
C+ HGD +P+NIM+ E
Sbjct: 499 CVVHGDIKPSNIMLDE 514
>11_04_0423 - 17498569-17498932,17499217-17499992,17503439-17504617
Length = 772
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 419 ETIPIDYQLIYYGCPIIDFLYFVFTATDKEFRRAH 523
ET+ + YQ++Y CP I F + FTA F H
Sbjct: 482 ETLKV-YQILYQACPYIKFAH--FTANQAIFEAFH 513
>10_08_0459 +
18092656-18092724,18092827-18092886,18092970-18093038,
18093134-18093178,18093706-18094332,18094424-18094597,
18094688-18094991,18095070-18095161,18095253-18095319,
18095407-18095478,18095613-18095830,18095979-18096113,
18096225-18096520,18096603-18096774,18096860-18096958,
18097048-18097179,18097273-18097373,18097460-18097649,
18097713-18097751
Length = 986
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 488 FTATDKEFRRAHLTHLKTLYYDTMQNFLEYFDISIESVYSKT-DFDNDYKKNLITGLIVT 664
FT +D+E R ++ + Y+ + I++V +K F + KKN I V
Sbjct: 719 FTVSDQENRY----YIAICRLSDSSKWQSYYAVDIDNVKAKFYSFGHSLKKNCIVSPYVI 774
Query: 665 ILYCPFMFVDEN 700
++C +F D +
Sbjct: 775 SVFCRVLFQDSH 786
>05_01_0356 +
2785410-2785670,2785843-2785960,2786800-2786891,
2787114-2787176,2787299-2787397,2787726-2787884,
2788420-2788491,2788567-2788699,2788813-2788877,
2789016-2789091,2789236-2789337,2789524-2789716,
2790576-2790654,2792939-2793007,2793261-2793311,
2793680-2793742,2793926-2794041,2794263-2794347,
2794898-2794957,2795594-2795639,2796011-2796084,
2796350-2796400,2796474-2796674,2796747-2796791,
2797063-2797156,2797226-2797371,2797510-2797739,
2798136-2798196,2798290-2798347,2799020-2799513
Length = 1151
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 95 AIKQLAKFHALSFALRERKPEYYESKIKTIPSRL 196
A+K + HA+S + RE+ ++YES I+ P L
Sbjct: 854 ALKLVGDVHAISSSGREKARKFYESAIRLEPGFL 887
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,088,552
Number of Sequences: 37544
Number of extensions: 344278
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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