Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0963
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      27   0.26 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   7.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   7.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   9.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 323 YFEGNDSAVCCLCHGDFRPNN 385
           +F+  +SAVC LCH  FR  N
Sbjct: 395 HFQPLNSAVCALCHKVFRTLN 415


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +2

Query: 224 VKSMQALTLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEI 403
           ++ M A+   +L D   KK++   P   + + +  EGN  ++    +G +   +I+ ++I
Sbjct: 334 MRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGNSDSINTKFYGMY---DILARDI 390

Query: 404 DG 409
            G
Sbjct: 391 LG 392


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 13/62 (20%), Positives = 31/62 (50%)
 Frame = +2

Query: 224 VKSMQALTLNFLNDNLRKKVENILPRLFDNITDYFEGNDSAVCCLCHGDFRPNNIMMKEI 403
           ++ M A+   +L D   KK++   P   + + +  EG+  ++    +G +   +I+ ++I
Sbjct: 334 MRLMDAIDSGYLIDEYGKKIDIYTPEGLNMLGNVIEGSSDSINTKFYGMY---DILARDI 390

Query: 404 DG 409
            G
Sbjct: 391 LG 392


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 584 YQNIQENFALYRNIGF 537
           YQ +  +F L RNIG+
Sbjct: 228 YQRLSLSFKLQRNIGY 243


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 701 RSRPQT*RGNTKW*QLNR*SSFSYNHYRNLF*NTRIL*KYQNIQE 567
           RSR +T R  +K  ++   ++++Y +Y N + + ++     NI++
Sbjct: 288 RSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQ 332


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 701 RSRPQT*RGNTKW*QLNR*SSFSYNHYRNLF*NTRIL*KYQNIQE 567
           RSR +T R  +K  ++   ++++Y +Y N + + ++     NI++
Sbjct: 299 RSRDRTERERSKETKIISSNNYNYKNYNNNYNSKKLYYNIINIEQ 343


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 248 LNFLNDNLRKKVENILPRLFDNITDYF 328
           LN+ N ++R++++NI+    D   D F
Sbjct: 201 LNYRNSDVREEMKNIMKFWLDKGIDGF 227


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 368 LRDTNNIQLNHFLQNNPLYYRIN 300
           + + NN   N++     LYY IN
Sbjct: 90  IHNNNNYNNNNYNNYKKLYYNIN 112


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 14  IILENLAKKGYK 49
           I+L+N+ K GYK
Sbjct: 206 IVLDNIKKSGYK 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,968
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)