Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0961
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    67   3e-12
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   9.0  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/41 (75%), Positives = 34/41 (82%)
 Frame = -3

Query: 763 KLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRINQQT 641
           K+KNT IAKEL LPPVKLHCSMLAEDAIK+A+  YR  Q T
Sbjct: 138 KIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLT 178


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 87  HEVIYPTTFLTYYNNSTFQ-ILHLLTN 164
           H+    +TF TY+ NST+Q IL+ L N
Sbjct: 257 HDSAGASTFNTYFPNSTYQNILNSLDN 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,779,293
Number of Sequences: 5004
Number of extensions: 53425
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)