Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0961
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex pr...    67   1e-11
At4g04080.1 68417.m00577 iron-sulfur cluster assembly complex pr...    67   1e-11
At3g01020.1 68416.m00003 iron-sulfur cluster assembly complex pr...    63   2e-10
At3g57960.1 68416.m06460 emsy N terminus domain-containing prote...    29   4.5  

>At4g22220.1 68417.m03214 iron-sulfur cluster assembly complex
           protein, putative similar to iron-sulfur cluster
           assembly complex ISCU1 (GI:11545705) [Homo sapiens];
           nifU protein homolog YPL135w (GI:15619823)
           [Saccharomyces cerevisiae] PIR2:S69049
          Length = 167

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = -3

Query: 766 LKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYR 656
           L +KNT+IAK LSLPPVKLHCSMLAEDAIKAA+ DY+
Sbjct: 113 LTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYK 149


>At4g04080.1 68417.m00577 iron-sulfur cluster assembly complex
           protein, putative similar to ISCU2 (GI:11545707) [Homo
           sapiens]
          Length = 171

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 31/46 (67%), Positives = 36/46 (78%)
 Frame = -3

Query: 766 LKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRINQQTENKE 629
           L +KN+ IAK LSLPPVKLHCSMLAEDAIKAA+ +Y+  Q   N E
Sbjct: 111 LTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIKNYKEKQDKANGE 156


>At3g01020.1 68416.m00003 iron-sulfur cluster assembly complex
           protein, putative similar to ISCU2 (GI:11545707) [Homo
           sapiens]; similar to NIFU-like protein (GI:15919270)
           [Cowdria ruminantium]
          Length = 163

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = -3

Query: 766 LKLKNTDIAKELSLPPVKLHCSMLAEDAIKAALSDYRINQQTEN 635
           + +KN +IAK L LPPVKLHCSMLAEDAIK+A+ DY+  Q   N
Sbjct: 110 MTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVRDYKEKQAKTN 153


>At3g57960.1 68416.m06460 emsy N terminus domain-containing protein
           / ENT domain-containing protein contains Pfam profile
           PF03735: ENT domain
          Length = 223

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 110 FFNILQQFDFSNFTLANKYISVV 178
           F+N+LQ F F N T++NK   ++
Sbjct: 46  FYNLLQTFAFENSTMSNKRTEII 68


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,359,987
Number of Sequences: 28952
Number of extensions: 236244
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)