Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0960
(445 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0594 + 25349612-25352530 28 2.9
11_06_0567 - 25038537-25038957,25039059-25039252 28 3.9
01_06_0495 - 29779499-29781325 28 3.9
11_06_0667 + 26071774-26072070,26072352-26073153,26073209-260734... 27 6.8
04_04_0415 + 25038826-25038835,25039333-25039964,25040484-250405... 27 6.8
12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,146... 27 9.0
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 27 9.0
07_03_1526 + 27456426-27456700,27457936-27458023,27458129-274587... 27 9.0
02_01_0679 - 5048653-5051394 27 9.0
02_01_0065 - 477465-477512,477593-477685,477777-478316,478667-47... 27 9.0
>11_06_0594 + 25349612-25352530
Length = 972
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -1
Query: 205 AICFCLSVHFAQWVSKASGILSLIF 131
++CFC +H + W+S A +L+ +
Sbjct: 426 SLCFCSPLHLSSWLSNAEKMLTFCY 450
>11_06_0567 - 25038537-25038957,25039059-25039252
Length = 204
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 220 CASCFAICFCLSVHFAQWVSKASGILSLI 134
C + A FC VH A +VS A+G+ L+
Sbjct: 135 CTTAAAGNFCNQVHIAMYVSLAAGVALLV 163
>01_06_0495 - 29779499-29781325
Length = 608
Score = 27.9 bits (59), Expect = 3.9
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 135 IKDKIP-EALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFKDF 311
+KD IP L T +K D K A++L G+ + W+ I Y G+YQ + + F
Sbjct: 148 VKDPIPMNCLITGYSKSGDVVK--ARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLF 205
>11_06_0667 +
26071774-26072070,26072352-26073153,26073209-26073411,
26075078-26075521,26075703-26075758,26076323-26076402,
26077098-26077174,26077279-26078301
Length = 993
Score = 27.1 bits (57), Expect = 6.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +3
Query: 168 HCAKCTDKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFKDF 311
H + +D ++ KQ + + +D F+T YD YQ S ++F
Sbjct: 146 HMGRLSDGREVAIKQFHDDLS-IYASKYDPFVTHYDHDEFYQRSIEEF 192
>04_04_0415 +
25038826-25038835,25039333-25039964,25040484-25040561,
25040588-25040833,25041598-25041684,25041860-25042024
Length = 405
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 230 EDTPGVMGRVHYFLRPSR 283
ED G+ + HYF+RPSR
Sbjct: 158 EDVLGLFRKFHYFVRPSR 175
>12_01_0199 - 1467137-1467172,1467302-1467391,1468304-1468396,
1468488-1469515,1470005-1470552,1470656-1470695,
1473774-1475196
Length = 1085
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 84 YTKC-LLNQGPCTAELKKIKDKIPEALETHCAKCTDKQ-KQMAKQLA--QGIKK 233
+ +C LL + A KK++DKI + AK D+ Q+A+ LA G+KK
Sbjct: 935 FEECYLLVEEALHAVSKKVEDKIKQTYSDGIAKSNDQSTSQLAQNLAHVSGLKK 988
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 96 LLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGI 227
LLNQGP ++ + +P AL DK K +L GI
Sbjct: 318 LLNQGPPPPSMRNHINLLPTALPPQVGMAMDKGKAPLIELPYGI 361
>07_03_1526 +
27456426-27456700,27457936-27458023,27458129-27458725,
27458731-27460056,27460283-27460729
Length = 910
Score = 26.6 bits (56), Expect = 9.0
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -1
Query: 238 CVFLIPCASCFAICF 194
C++++ C SC+A CF
Sbjct: 835 CIYMMECNSCYANCF 849
>02_01_0679 - 5048653-5051394
Length = 913
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 362 MYLLNKLKYCFIYLRL---KKIFERSLIFSLRVVK 267
MYL LK CF+Y + IF+R L+ L +V+
Sbjct: 421 MYLPRHLKNCFLYCSMFPQDYIFKRELLIKLWIVE 455
>02_01_0065 -
477465-477512,477593-477685,477777-478316,478667-478670,
479494-480063,480167-480204
Length = 430
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +3
Query: 84 YTKC-LLNQGPCTAELKKIKDKIPEALETHCAKCTDKQ-KQMAKQLA--QGIKK 233
+ +C LL + A KK++DKI + AK D+ Q+A+ LA G+KK
Sbjct: 306 FEECYLLVEEALHAVSKKVEDKIKQTYSDGIAKSNDQSTSQLAQNLAHVSGLKK 359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,262,402
Number of Sequences: 37544
Number of extensions: 186210
Number of successful extensions: 462
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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