Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0960
         (445 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    32   0.22 
Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical pr...    30   0.87 
Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical pr...    30   0.87 
U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    28   2.7  
U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    28   3.5  
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    28   3.5  
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    28   3.5  
AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    27   6.1  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      27   6.1  
Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL117195-2|CAB60773.1|  245|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +3

Query: 66   ERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKK 233
            E + K   KC  N   C   ++K+  K  + ++  C KC    K+ AK + +  KK
Sbjct: 1265 ENVQKMCKKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKCAKNVQKMCKK 1320



 Score = 26.6 bits (56), Expect = 8.1
 Identities = 13/56 (23%), Positives = 25/56 (44%)
 Frame = +3

Query: 66   ERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKK 233
            ++  K+  KC  N      +  K   K+ +     C KC    ++M K+ A+ ++K
Sbjct: 1272 KKCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKCAKNVQKMCKKCAKNVQK 1327


>Z99278-4|CAB16492.1|  871|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3b protein.
          Length = 871

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 105 QGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 257
           + P T +++  KD +    E HC +C   Q    +  +  I+K + +LW E
Sbjct: 679 ENPKTDDIQS-KDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCE 728


>Z99278-3|CAB16493.1|  867|Caenorhabditis elegans Hypothetical
           protein Y53C12B.3a protein.
          Length = 867

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 105 QGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 257
           + P T +++  KD +    E HC +C   Q    +  +  I+K + +LW E
Sbjct: 676 ENPKTDDIQS-KDDVTSKSELHCYRCEHYQLPAEEVSSHNIRKDNGDLWCE 725


>U41624-4|AAF99945.1|  322|Caenorhabditis elegans Hypothetical
           protein F46C8.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 230 EDTPGVMGRVHYFLRPSRKISNFFQRFS*VL 322
           E+ P V+GR H  L+P     N++++F  V+
Sbjct: 155 ENDPRVIGRAHSILKPYGLAGNYWEKFGEVM 185


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 63  NERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQL 215
           NE+L +  +   L +     +LKKI+DK+         K  DK K + ++L
Sbjct: 20  NEKLTRDVSDAKLLKEDAEIKLKKIRDKLNGEHSEKLGKLNDKYKAVQEEL 70


>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying
           defective protein 19,isoform a protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -3

Query: 344 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 192
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 191 FISTFRTMGLQSF-WNFIFN 135
           FI  F  +G+Q F   F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying
           defective protein 19,isoform b protein.
          Length = 1877

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -3

Query: 344 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 192
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 191 FISTFRTMGLQSF-WNFIFN 135
           FI  F  +G+Q F   F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
           calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
 Frame = -3

Query: 344 LKYCFIYLRLKKIFERSLIFS---LRVVKSNELVP*LR---VCLLNSLRKLFRHLLL--- 192
           L++  +Y  L K    S++ S   LR+ K  +    LR     LLNSLR +   LLL   
Sbjct: 550 LEFVLVYFDLMKPLGVSVLRSARLLRIFKVTKYWTSLRNLVSSLLNSLRSIISLLLLLFL 609

Query: 191 FISTFRTMGLQSF-WNFIFN 135
           FI  F  +G+Q F   F FN
Sbjct: 610 FIVIFALLGMQVFGGKFNFN 629


>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
           protein Y75B8A.22 protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 117 TAELKKIKDKIPEALETHCAKCTDKQKQMAK 209
           TAE KK +++  + +E H  K T K+K  ++
Sbjct: 240 TAEQKKTEEEFRKIIENHVVKETQKRKSFSR 270


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 117 TAELKKIKDKIPEALETHCAKCTDKQKQMAK 209
           TAE KK +++  + +E H  K T K+K  ++
Sbjct: 240 TAEQKKTEEEFRKIIENHVVKETQKRKSFSR 270


>Z81508-4|CAB04139.1|  371|Caenorhabditis elegans Hypothetical
           protein F20E11.6 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = -3

Query: 362 MYLLNKLKYCFIYLRLKKIFERSLIFSLRVVKSNELVP*LRVCLLNSLRKLFRHLLLFIS 183
           ++  N   +C I   +   +  ++  +    K++ L   +RV LL  LRKLF        
Sbjct: 300 LFCFNSASHCLINFSMSTNYRNTVKMAFGFQKNDVLT--VRVWLLFQLRKLFSGFEKNDK 357

Query: 182 TFRTMGLQSFW 150
           ++  + +  FW
Sbjct: 358 SYENLTVSIFW 368


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 244 SGCVFLIPCASCFAICFCL 188
           S  + ++   SCF ICFC+
Sbjct: 199 STAIIIVTLISCFTICFCI 217


>Z66515-8|CAD59154.1|  488|Caenorhabditis elegans Hypothetical
           protein R53.7b protein.
          Length = 488

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 187 SVHFAQWVSKASGILSL 137
           S+HFAQW+SK+ G+ ++
Sbjct: 310 SLHFAQWLSKSIGMSAI 326


>Z66515-7|CAA91351.1|  460|Caenorhabditis elegans Hypothetical
           protein R53.7a protein.
          Length = 460

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -1

Query: 187 SVHFAQWVSKASGILSL 137
           S+HFAQW+SK+ G+ ++
Sbjct: 282 SLHFAQWLSKSIGMSAI 298


>AL117195-2|CAB60773.1|  245|Caenorhabditis elegans Hypothetical
           protein Y57A10A.3 protein.
          Length = 245

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 350 NKLKYCFIYLRLKKIFERSLIFSLRVV 270
           +K+ +CF + +L  +   S+IFSL +V
Sbjct: 205 SKISHCFFFAKLPNLLYFSVIFSLIIV 231


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,628,561
Number of Sequences: 27780
Number of extensions: 195880
Number of successful extensions: 666
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)