Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0960
         (445 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containi...    30   0.61 
At5g11100.1 68418.m01296 C2 domain-containing protein similar to...    29   1.9  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   2.5  
At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family pro...    28   3.3  
At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2 (G...    27   4.3  
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m...    27   4.3  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    27   7.5  
At2g36570.1 68415.m04485 leucine-rich repeat transmembrane prote...    27   7.5  
At1g67780.1 68414.m07734 hypothetical protein                          27   7.5  
At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CH...    26   10.0 
At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4...    26   10.0 
At2g48160.1 68415.m06031 PWWP domain-containing protein                26   10.0 
At2g18880.1 68415.m02203 fibronectin type III domain-containing ...    26   10.0 

>At4g21705.1 68417.m03143 pentatricopeptide (PPR) repeat-containing
           protein low similarity to DNA-binding protein [Triticum
           aestivum] GI:6958202; contains Pfam profile PF01535: PPR
           repeat
          Length = 492

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 186 DKQKQMAKQLAQGIKKTHPELWDEFITFYDPQGKYQTSFK 305
           +K + M + LA+  K T PE W+   T Y  +G  + +FK
Sbjct: 354 EKAEAMLEDLARRGKATTPESWELVATAYAEKGTLENAFK 393


>At5g11100.1 68418.m01296 C2 domain-containing protein similar to
           Ca2+-dependent lipid-binding protein (CLB1) GI:2789434
           from [Lycopersicon esculentum]
          Length = 574

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 9   QDKYEPIDDSFDASEVLSNERLLKSYTKCLLNQGPCTAELKKIKDKIPEA 158
           QD  + +   F  S V+ ++R   SY+KCLLN      EL+KI   + EA
Sbjct: 48  QDSRKLLPGDFYPSWVVFSQRQKLSYSKCLLNW--LNLELEKIWPYVNEA 95


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 21   EPIDDSFDASEVLSNERLLKSYTKCLLNQGPCT 119
            EP+D     + V+S+  L+ SY +CL +QG  T
Sbjct: 2496 EPLDTPTMNNVVMSSVELIYSYAECLASQGKDT 2528


>At3g12775.1 68416.m01595 ubiquitin-conjugating enzyme family
           protein contains Pfam profile PF00179:
           Ubiquitin-conjugating enzyme
          Length = 362

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 78  KSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDE 257
           K Y + +LN     AEL+K+K+K    L  +    +        Q   GIKKT    W++
Sbjct: 298 KVYCEQILNSD-LKAELEKLKEK-EYTLSDYYYGSSSSNYPTYTQRDDGIKKTSKSFWNK 355

Query: 258 FIT 266
           +++
Sbjct: 356 YLS 358


>At2g33550.1 68415.m04112 gt-2-related weak similarity to gt-2
           (GI:20249) [Oryza sativa]
          Length = 314

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 33  DSFDASEVLSNERLLKSYTKCL--LNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMA 206
           D  ++ E L++  + KS T  +    Q  C A+  ++K+K PEA        T ++++  
Sbjct: 178 DRRESPEKLNSTPVAKSVTDVIDKEKQEACVADQGRVKEKQPEAANVE-GGSTSQEERKR 236

Query: 207 KQLAQGIKKTHPE 245
           K+ + G K+   E
Sbjct: 237 KRTSFGEKEEEEE 249


>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
           myosin heavy chain (GI:1850913) [Entamoeba histolytica];
           similar to Intracellular protein transport protein USO1
           (Swiss-Prot:P25386) [Saccharomyces cerevisiae]
          Length = 555

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 60  SNERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTH 239
           S E+ +   TK LL    C  E+KK KD++ +  E    K   + ++  K+  + +K+T 
Sbjct: 450 SYEKTVVEATKMLLTAKKCVVEMKKEKDEMAKEKEEVEKKLEGQVREEEKE-KEKLKETL 508

Query: 240 PELWDE 257
             L +E
Sbjct: 509 LGLGEE 514


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 27   IDDSFDASEVLSN-ERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQM 203
            ++D FD + +++   R+ ++ TK L          ++I     E+ ET    C D ++ +
Sbjct: 873  MEDEFDDALLITRLRRISRNKTKELRECRNAAKSCEEISVTAEESEET--VDCKDHEESL 930

Query: 204  AKQLAQGIKKTH 239
            + + +Q +KK H
Sbjct: 931  SNKPSQKVKKAH 942


>At2g36570.1 68415.m04485 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 672

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +3

Query: 27  IDDSFDASEVLSNERLLKSYTKCLLNQGPCTAELKKIKDKIP 152
           +DD   AS  +  +  L +  K +L+ G  T  +K++KD  P
Sbjct: 352 LDDLLKASAEMLGKGSLGTVYKAVLDDGSTTVAVKRLKDANP 393


>At1g67780.1 68414.m07734 hypothetical protein
          Length = 515

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +3

Query: 48  SEVLSNERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGI 227
           +++L    L  +   CLL+Q     + KK+  K  +A  TH  K   ++ Q   QL QGI
Sbjct: 148 TQILIFVNLALNVLLCLLDQYDVAKDKKKVVGKSKKANATHKLK---EEIQFEAQLPQGI 204


>At5g22900.1 68418.m02678 cation/hydrogen exchanger, putative (CHX3)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 822

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 36  SFDASEVLSNERLLKSYTKCLLNQGPCT 119
           S D S ++SN  ++++  K +L+  PC+
Sbjct: 615 SADGSALISNNNMIRNLNKSVLDVAPCS 642


>At3g59420.1 68416.m06627 receptor protein kinase, putative (ACR4)
           identical to putative receptor protein kinase ACR4
           [Arabidopsis thaliana] GI:20302590; contains protein
           kinase domain, Pfam:PF00069
          Length = 895

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 13/68 (19%), Positives = 30/68 (44%)
 Frame = +3

Query: 48  SEVLSNERLLKSYTKCLLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGI 227
           SE+ + +R++    KC+  +G     + K+   +  AL       + +Q  +  ++  G 
Sbjct: 752 SEIEALKRIVSVACKCVRMRGKDRPSMDKVTTALERALAQLMGNPSSEQPILPTEVVLGS 811

Query: 228 KKTHPELW 251
            + H + W
Sbjct: 812 SRMHKKSW 819


>At2g48160.1 68415.m06031 PWWP domain-containing protein
          Length = 1366

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = -2

Query: 375 LIQMNVSIKQTEILFYLFKTQENL*KKFDIF 283
           L++  VS K  EIL +  +++ NL ++ D+F
Sbjct: 868 LMKFGVSAKAMEILAHTLESESNLKRRVDLF 898


>At2g18880.1 68415.m02203 fibronectin type III domain-containing
           protein contains Pfam profile PF00041: Fibronectin type
           III domain
          Length = 417

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 96  LLNQGPCTAELKKIKDKIPEALETHCAKCTDKQKQMAKQLAQGIKKTHPELWDEFI-TFY 272
           L+ Q  C+ ++K   D   + L  +C K TDK+K + +      K     L  + I TF 
Sbjct: 334 LIRQLECSGQVKS--DFRKKFLTWYCLKATDKEKHVVEIFVDTFKDDKEALAKQLIDTFS 391

Query: 273 D 275
           D
Sbjct: 392 D 392


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,861,191
Number of Sequences: 28952
Number of extensions: 168609
Number of successful extensions: 439
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 712739520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)