Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0959
(380 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch... 74 7e-15
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 27 0.99
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 2.3
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 2.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 2.3
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 5.3
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar... 25 5.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 24 7.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 24 7.0
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 24 7.0
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 24 9.3
>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 341
Score = 74.1 bits (174), Expect = 7e-15
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
Frame = +2
Query: 113 KNFSTTSQRNFKXXXXXXXXXIGQPLALLLKQNPLVTRLALYDIAPVTPGVAADLSHMNT 292
++FSTTS R FK IGQPL++LLK N V+ LAL+DI PGVAAD+ H+NT
Sbjct: 19 RSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKLNDKVSELALFDIRG-APGVAADIGHINT 77
Query: 293 PAKVSGHNGPEE--LSAAIKDADVVVI 367
+ V G+ P++ L A+ ADVV+I
Sbjct: 78 TSNVVGY-APDDKGLEKALNGADVVII 103
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.1 bits (57), Expect = 0.99
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 91 PCCTKWCKELFHHITEEL*SGGRWCR 168
P C WC ++ IT+ + G WCR
Sbjct: 319 PDCKSWCGIIYQFITDS--NVGMWCR 342
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 233 LYDIAPVTPGVAADLSHMNTPAKVSGHNGPEELSAA 340
L + APV G A S + V+G GP ELS A
Sbjct: 12 LINSAPVILGYALQNSLQTSSVIVTGRLGPSELSVA 47
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +2
Query: 215 LVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHNGPEELSAAI 343
++ RLALY+ A V P + + + + + SG++ +E SA +
Sbjct: 586 IIGRLALYNPAHVMPSLRKTIIQLLSDMEYSGNSRQKEESAQL 628
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 79 KTCRPCCTKWCKELFHHITEEL*SGGRWCRRWY 177
K C+ C + C+ +HHI E+L CRR Y
Sbjct: 33 KPCQ-CGYRVCRFCWHHIKEDLNGRCPACRRLY 64
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 5.3
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +1
Query: 160 WCRRWYRPAFGPSTEAESSGDQAGFIRHSACD 255
WC + +P F + S GD G R C+
Sbjct: 260 WCGKQEKPEFVKNLVPHSCGDPCGKTRGQDCE 291
>SPAC343.14c |||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 5.3
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +2
Query: 212 PLVTRLALYDIAPVTPGVAADLSHMNTPAKVSGHNGPEELSAA 340
P+V +Y ++PV P + +++P K+ N + +S A
Sbjct: 306 PVVVCSGIYKLSPVYPYDLESIIQLSSPDKIMSFNEGDLISRA 348
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 24.2 bits (50), Expect = 7.0
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 138 LCDVVEKFFAPFCTARAAG 82
LC++V KFF CT G
Sbjct: 217 LCNLVHKFFVDACTVPGEG 235
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 273 SAATPGVTGAMSYKASLVTRGFCFSRRAKGW 181
+A T + G + +K L+T G +R AK W
Sbjct: 642 NAKTVTLEGTVIHKTGLITGGSSNNRSAKHW 672
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 24.2 bits (50), Expect = 7.0
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 184 AFGPSTEAESSGDQAGFIRHSACDPRRRSRPFPHEH 291
A P S QAG+ DP +R +P P+ H
Sbjct: 688 AMSPEDLEASRQMQAGYEVKEELDPAQRVKPAPNPH 723
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 23.8 bits (49), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 276 RSAATPGVTGAMSYKASLVTRGFCFSRRAKGWPI 175
+S TPG A K+ +T+G R A+G P+
Sbjct: 272 QSHPTPGKFDAAKAKSLGITKGLDCGRLARGEPV 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,077
Number of Sequences: 5004
Number of extensions: 36191
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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