Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0957
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    30   0.031
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.7  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.2  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 0.031
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 391 ILSRYDAETDNFFVTKFDL 447
           + S+YDA+  NFF+T FDL
Sbjct: 371 LFSKYDAKKRNFFITMFDL 389


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 511 NRSALNSSKFNNYNY 555
           N +  N++ +NNYNY
Sbjct: 92  NNNNYNNNNYNNYNY 106


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 472 LKYIRSTETDRIWLRKNYQSPHRSDLKYFYD-VFDNSFIKI 353
           LKY+  T+  R+W+   + S  +    +F++ +  N +I+I
Sbjct: 104 LKYLTLTDASRVWMPDLFFSNEKEG--HFHNIIMPNVYIRI 142


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 472 LKYIRSTETDRIWLRKNYQSPHRSDLKYFYD-VFDNSFIKI 353
           LKY+  T+  R+W+   + S  +    +F++ +  N +I+I
Sbjct: 104 LKYLTLTDASRVWMPDLFFSNEKEG--HFHNIIMPNVYIRI 142


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 345 LVTNLSVIHEGKSNNTSVSW 286
           L+T+  V   GK+ N SV+W
Sbjct: 503 LITSSEVRQPGKAPNYSVNW 522


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 267 QNNIGCTNSLMYY 305
           QN +GC NSL+ Y
Sbjct: 335 QNAVGCWNSLLPY 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,257
Number of Sequences: 438
Number of extensions: 4434
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)