Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0955
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)             174   4e-44
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)             157   7e-39
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)              149   2e-36
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   2e-34
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)         72   3e-13
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         70   1e-12
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)         69   2e-12
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)          62   3e-10
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         48   5e-06
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   8e-06
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)         35   0.060
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)            32   0.42 
SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)               27   9.1  

>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score =  174 bits (424), Expect = 4e-44
 Identities = 84/149 (56%), Positives = 98/149 (65%)
 Frame = +2

Query: 167 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPE 346
           L+F+A   +D       VT KV  D+ IG    G +++GLFG T PKT  NF  LA K +
Sbjct: 8   LVFVAFVNADTETTA-SVTKKVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQ 66

Query: 347 GEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRNIYGERFEDENFKLKHYGAGWLSMANAG 526
           G GYK S FHRVIKNFMIQ             +IYG+ F+DENF LKHYG GWL MANAG
Sbjct: 67  GFGYKDSIFHRVIKNFMIQGGDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAG 126

Query: 527 KDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           K+TNGSQF+ITT+KT WLDG H  FGKVL
Sbjct: 127 KNTNGSQFYITTIKTSWLDGSHTCFGKVL 155


>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score =  157 bits (381), Expect = 7e-39
 Identities = 88/167 (52%), Positives = 106/167 (63%), Gaps = 18/167 (10%)
 Frame = +2

Query: 167 LLFIASAKSDEIPKGPKVTHKVSFDMKIGDDNIGTIVIGLFG-------------KTVPK 307
           L F+AS+ +    K P VT KV FD+ IG +  G I IGLF              +++  
Sbjct: 12  LFFLASSAA----KDPIVTKKVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIG 67

Query: 308 TTENFFQL-----AQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXXRNIYGERFEDE 472
           T   +F        +  +G GYK S FHRVI++FMIQ            ++IYG++F DE
Sbjct: 68  TNFRYFDTYYCCTIESQKGFGYKNSIFHRVIQDFMIQGGDFTKGDGTGGKSIYGQKFADE 127

Query: 473 NFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           NFKL+HYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL
Sbjct: 128 NFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 174


>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
          Length = 298

 Score =  149 bits (360), Expect = 2e-36
 Identities = 72/133 (54%), Positives = 88/133 (66%)
 Frame = +2

Query: 215 KVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNF 394
           +V  +V FD+ IG+ + G IV+ L    VP T ENF  L    +G GYKGS FHR+I  F
Sbjct: 134 RVNPRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQF 193

Query: 395 MIQXXXXXXXXXXXXRNIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTP 574
           M Q            ++IYG +FEDENF LKH GAG LSMAN+G +TNGSQFF+TT KT 
Sbjct: 194 MCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTNGSQFFLTTEKTD 253

Query: 575 WLDGRHVVFGKVL 613
           WLDG+HVVFG V+
Sbjct: 254 WLDGKHVVFGNVI 266


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score =  142 bits (345), Expect = 2e-34
 Identities = 73/133 (54%), Positives = 83/133 (62%)
 Frame = +2

Query: 212 PKVTHKVSFDMKIGDDNIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKN 391
           PK T+   FD++IG    G IV+ L    VPKT ENF  L    +G GYKGS FHRVI  
Sbjct: 2   PKTTY---FDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPG 58

Query: 392 FMIQXXXXXXXXXXXXRNIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKT 571
           FM Q            ++IYG +F DENF LKH G G LSMANAG  TNGSQFF+ T KT
Sbjct: 59  FMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTNGSQFFLCTAKT 118

Query: 572 PWLDGRHVVFGKV 610
            WLDG+HVVFG V
Sbjct: 119 SWLDGKHVVFGSV 131


>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +2

Query: 512 MANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           MANAGKDTNGSQFFITTVKT WLDG+HVVFGKVL
Sbjct: 1   MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVL 34


>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
          Length = 99

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
 Frame = +2

Query: 443 NIYGERFEDENFK-LKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           +I+G  FEDE  + L+H     +SMANAG +TNGSQFFIT V TPWLD +H VFG+V+
Sbjct: 8   SIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVFGRVV 65


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 33/43 (76%), Positives = 36/43 (83%)
 Frame = +2

Query: 485 KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           +H   G LSMAN+G +TNGSQFFITTV TP LDGRHVVFGKVL
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVL 230


>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
          Length = 145

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/57 (49%), Positives = 40/57 (70%)
 Frame = +2

Query: 443 NIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           ++YG  FEDE+F + H   G + MAN G+ TNGSQF+IT    PW+D ++V FG+V+
Sbjct: 51  SVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQVI 107


>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
          Length = 49

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 27/35 (77%), Positives = 29/35 (82%)
 Frame = +2

Query: 506 LSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKV 610
           LSMANAG  TNGSQFF+ T KT WLDG+HVVFG V
Sbjct: 3   LSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSV 37


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 29/57 (50%), Positives = 33/57 (57%)
 Frame = +2

Query: 443 NIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           +IYG  F DE F+ KH     LSMAN G +TNGSQFFI           HVVFG V+
Sbjct: 31  SIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFGHVI 77


>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1651

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 26/57 (45%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = +2

Query: 455 ERFEDENFKL----KHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDGRHVVFGKVL 613
           E  +DE   L     H   G +SMAN G ++NGSQFFI   K P LD ++ +FGK L
Sbjct: 286 EELDDEALDLMGRCNHNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFGKYL 342


>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 40/124 (32%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
 Frame = +2

Query: 260 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIKNFMIQXXXXXXXXXXXX 439
           ++G I I L     P +T NF  LA    G  Y G++FHRVI  FM+Q            
Sbjct: 31  SLGEIEIELDADKAPISTANF--LAYVDSGY-YAGTQFHRVIPGFMVQGGGFDADMQQKD 87

Query: 440 RNIYGERFEDENFKLKHYGAGWLSMANAG-KDTNGSQFFITTVKTPWLDG-----RHVVF 601
                +   D      H   G L+MA    +D+  SQFFI      +LD       + VF
Sbjct: 88  TQAPIKNEADNGL---HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVF 144

Query: 602 GKVL 613
           GKV+
Sbjct: 145 GKVV 148


>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
          Length = 454

 Score = 34.7 bits (76), Expect = 0.060
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +2

Query: 260 NIGTIVIGLFGKTVPKTTENFFQLAQKPEGEGYKGSKFHRVIK 388
           ++G I I L+GK  PK   NF QL    EG  Y  + FHR++K
Sbjct: 11  SVGDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIVK 50


>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
          Length = 48

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = +2

Query: 266 GTIVIGLFGKTVPKTTENFFQLAQKPEGEG--------YKGSKFHR 379
           G ++  LF   VPKT ENF  L    +G G        YKG  FHR
Sbjct: 2   GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47


>SB_32386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 222 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 121
           VTL PL +S+    ++N +   A+VRV  I  SL
Sbjct: 38  VTLSPLQVSAKTGASLNGRAEVAMVRVSPILASL 71


>SB_15012| Best HMM Match : zf-CCHC (HMM E-Value=1.1e-05)
          Length = 410

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -1

Query: 222 VTLGPLGISSDLALAMNNKIPKAIVRVPMIKTSL 121
           VTL PL +S+    ++N++   A+VRV  I  SL
Sbjct: 336 VTLSPLQVSAKTGSSLNDQAEVAMVRVSPILASL 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,199
Number of Sequences: 59808
Number of extensions: 332913
Number of successful extensions: 556
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)