Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= an--0954
(775 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 303 2e-83
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 175 8e-45
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 172 5e-44
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 170 2e-43
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 169 3e-43
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 169 4e-43
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 167 1e-42
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 165 8e-42
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 163 2e-41
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 148 8e-37
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.3
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 27 3.0
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc... 26 5.2
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.9
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 26 6.9
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.1
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 25 9.1
SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p... 25 9.1
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 303 bits (743), Expect = 2e-83
Identities = 143/246 (58%), Positives = 183/246 (74%), Gaps = 1/246 (0%)
Frame = +1
Query: 40 VSTTQRMIQSVAFPPSHKLTVSEVFD-EKTGKPLPDVLKQHFILEGRIEENAALRIIQDG 216
VST R++++V P ++ T E FD + KP L+ HFI EGR+ E L II+
Sbjct: 38 VSTLDRVVKNVQAPATYIPTDVEFFDINEPDKPDLHFLRNHFIREGRLSEEQTLYIIKKA 97
Query: 217 ATLLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLFLGDYVDRGYFSIE 396
+L+SE +IE+D+PVTVCGD+HGQ+YDLMKLFEVGG+P+ T+YLFLGDYVDRGYFSIE
Sbjct: 98 TEILKSEDNLIEVDAPVTVCGDIHGQYYDLMKLFEVGGNPANTQYLFLGDYVDRGYFSIE 157
Query: 397 CVLYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSEKVYDACMDAFDCLPLA 576
C+LYLWALK+ YPKTL+LLRGNHEC HLT+YFTFK EC KY+ KVY+AC+ +F+ LPLA
Sbjct: 158 CLLYLWALKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPLA 217
Query: 577 ALMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPPAFWSHV*PAVV*SS*RFWQ*KNAEHF 756
A+MN+QFLCVHGGLSPE+++L+DIR ++RF EPP F K+ +HF
Sbjct: 218 AIMNKQFLCVHGGLSPELHTLNDIRMINRFCEPPTHGLMCDLLWSDPLEDFGSEKSNKHF 277
Query: 757 SHNSVR 774
HN+VR
Sbjct: 278 IHNNVR 283
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 175 bits (425), Expect = 8e-45
Identities = 84/168 (50%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = +1
Query: 178 IEENAALRIIQDGATLLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLF 357
I E+ + + Q +L E + I SPVT+CGD+HGQ +DL++LF +GGS TKYLF
Sbjct: 19 IPESNVVELCQRVRDILIEESNIQWISSPVTICGDIHGQLHDLLELFRIGGSCPGTKYLF 78
Query: 358 LGDYVDRGYFSIECVLYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SEKV 534
LGD+VDRG++S+E L L LK YPK + L+RGNHE R +T+ + F EC KY S V
Sbjct: 79 LGDFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNHESRQITQVYGFYDECVRKYGSANV 138
Query: 535 YDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
+ C + FD L L AL++ + CVHGGLSP I+S+D IR LDR +E P
Sbjct: 139 WRYCCEIFDYLSLGALVDGKVFCVHGGLSPSISSIDQIRLLDRKQEVP 186
Score = 33.5 bits (73), Expect = 0.034
Identities = 14/21 (66%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +2
Query: 659 IDSKSHL-HFGAMCDLLWSDP 718
+D K + H GAMCDLLWSDP
Sbjct: 179 LDRKQEVPHEGAMCDLLWSDP 199
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 172 bits (418), Expect = 5e-44
Identities = 80/168 (47%), Positives = 109/168 (64%), Gaps = 1/168 (0%)
Frame = +1
Query: 178 IEENAALRIIQDGATLLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLF 357
+ E+ R+ + +L E + + +PVTVCGD+HGQFYDL++LF VGG T Y+F
Sbjct: 17 LPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPSTNYIF 76
Query: 358 LGDYVDRGYFSIECVLYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SEKV 534
+GD+VDRGYFS+E LK YP + LLRGNHE R +T+ + F EC+ KY + V
Sbjct: 77 MGDFVDRGYFSLETFTLFMLLKARYPDKITLLRGNHESRQITQVYGFYDECQTKYGNANV 136
Query: 535 YDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
+ C FD L LAA+++ + LCVHGGLSPE+ +LD IR L R +E P
Sbjct: 137 WKYCCQVFDFLTLAAVIDNKILCVHGGLSPEVRTLDQIRILARAQEIP 184
Score = 28.7 bits (61), Expect = 0.98
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +2
Query: 680 HFGAMCDLLWSDP 718
H G+ CDL+WSDP
Sbjct: 185 HEGSFCDLMWSDP 197
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 170 bits (414), Expect = 2e-43
Identities = 69/149 (46%), Positives = 107/149 (71%)
Frame = +1
Query: 232 SEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLFLGDYVDRGYFSIECVLYL 411
S+ ++E+++P+ +CGD+HGQ+YDL++LFE GG P YLFLGDYVDRG S+E + L
Sbjct: 47 SQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLEVICLL 106
Query: 412 WALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSEKVYDACMDAFDCLPLAALMNQ 591
A K+ YP+ F+LRGNHEC + + F ECK +Y+ K++ D F+CLP+AA++++
Sbjct: 107 LAYKIKYPENFFILRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDE 166
Query: 592 QFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
+ +HGGLSP++NS+D I+++ R + P
Sbjct: 167 KIFTMHGGLSPDLNSMDQIQRIMRPTDVP 195
Score = 28.7 bits (61), Expect = 0.98
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 686 GAMCDLLWSDPLED 727
G +CDLLWSDP +D
Sbjct: 198 GLLCDLLWSDPDKD 211
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 169 bits (412), Expect = 3e-43
Identities = 79/168 (47%), Positives = 108/168 (64%), Gaps = 1/168 (0%)
Frame = +1
Query: 178 IEENAALRIIQDGATLLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLF 357
+ E +++ +L E + + PVTVCGD+HGQF+DLM+LF +GG T YLF
Sbjct: 23 LSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLF 82
Query: 358 LGDYVDRGYFSIECVLYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SEKV 534
+GDYVDRGY S+E V L A K+ YP+ + +LRGNHE R +T+ + F EC KY + V
Sbjct: 83 MGDYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 535 YDACMDAFDCLPLAALMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
+ D FD LPL AL+ + C+HGGLSP I++LD +R LDR +E P
Sbjct: 143 WQYFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDHVRILDRVQEVP 190
Score = 29.1 bits (62), Expect = 0.74
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 680 HFGAMCDLLWSDP 718
H G +CDLLWSDP
Sbjct: 191 HEGPICDLLWSDP 203
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 169 bits (411), Expect = 4e-43
Identities = 70/153 (45%), Positives = 109/153 (71%)
Frame = +1
Query: 220 TLLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLFLGDYVDRGYFSIEC 399
++ S+ ++E+++P+ +CGD+HGQ+ DL++LFE GG P YLFLGDYVDRG S+E
Sbjct: 40 SIFLSQPMLLELEAPLKICGDIHGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEV 99
Query: 400 VLYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSEKVYDACMDAFDCLPLAA 579
+ L+A K+ YP+ FLLRGNHE + + F ECK +YS K++ D F+C+P+AA
Sbjct: 100 ICLLFAYKIKYPENFFLLRGNHEFASINRIYGFYDECKRRYSIKLWKTFTDCFNCMPVAA 159
Query: 580 LMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
+++++ C+HGGLSP++NSLD I+++ R + P
Sbjct: 160 VIDEKIFCMHGGLSPDLNSLDQIQRIIRPTDIP 192
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 686 GAMCDLLWSDPLED 727
G +CDL+WSDP +D
Sbjct: 195 GLLCDLVWSDPEKD 208
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 167 bits (407), Expect = 1e-42
Identities = 78/153 (50%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Frame = +1
Query: 223 LLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLFLGDYVDRGYFSIECV 402
+L E + + +PVTVCGD+HGQF+DLM+LF++GG YLF+GDYVDRGY S+E V
Sbjct: 51 VLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDMNYLFMGDYVDRGYHSVETV 110
Query: 403 LYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SEKVYDACMDAFDCLPLAA 579
L A+KL YP + +LRGNHE R +T+ + F EC KY S V+ + FD PL A
Sbjct: 111 SLLVAMKLRYPNRITILRGNHESRQITQVYGFYDECLRKYGSANVWKHFTNLFDYFPLTA 170
Query: 580 LMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
L+ + C+HGGLSP I+SLD +R LDR +E P
Sbjct: 171 LIEDRIFCLHGGLSPSIDSLDHVRTLDRVQEVP 203
Score = 30.7 bits (66), Expect = 0.24
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 680 HFGAMCDLLWSDP 718
H G MCDLLWSDP
Sbjct: 204 HEGPMCDLLWSDP 216
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 165 bits (400), Expect = 8e-42
Identities = 70/151 (46%), Positives = 107/151 (70%)
Frame = +1
Query: 232 SEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLFLGDYVDRGYFSIECVLYL 411
S+ T++E+ PV + GDVHGQ+ DL++LFE+ G P + YLFLGDYVDRG S+E +L L
Sbjct: 232 SQPTLLELTPPVKIVGDVHGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSLETILLL 291
Query: 412 WALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSEKVYDACMDAFDCLPLAALMNQ 591
+ K+ YP+ FLLRGNHEC ++T + F ECK + + K++ ++ F+CLP+A+++
Sbjct: 292 FLYKIRYPENFFLLRGNHECANITRVYGFYDECKRRCNIKIWKTFINTFNCLPIASVVAG 351
Query: 592 QFLCVHGGLSPEINSLDDIRKLDRFKEPPAF 684
+ CVHGGLSP ++ +DDIR++ R + P +
Sbjct: 352 KIFCVHGGLSPSLSHMDDIREIPRPTDVPDY 382
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 163 bits (397), Expect = 2e-41
Identities = 77/153 (50%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Frame = +1
Query: 223 LLRSEKTMIEIDSPVTVCGDVHGQFYDLMKLFEVGGSPSCTKYLFLGDYVDRGYFSIECV 402
+L E ++ + +P+TV GD+HGQF DL+++F +GG T YLFLGDYVDRGY+SIE +
Sbjct: 32 VLMQESNVVRLSTPITVVGDIHGQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIETI 91
Query: 403 LYLWALKLCYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SEKVYDACMDAFDCLPLAA 579
L LKL YPK + LLRGNHE R +T+ + F EC KY + V+ D FD L L+A
Sbjct: 92 TLLICLKLRYPKRITLLRGNHESRGITQTYGFYSECLRKYGNANVWKYFTDIFDFLTLSA 151
Query: 580 LMNQQFLCVHGGLSPEINSLDDIRKLDRFKEPP 678
++ CVHGGLSP I +D I LDRF+E P
Sbjct: 152 TIDDTIFCVHGGLSPSIQHIDQILVLDRFREFP 184
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 680 HFGAMCDLLWSDP 718
H G M DL+WSDP
Sbjct: 185 HEGPMADLVWSDP 197
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 148 bits (359), Expect = 8e-37
Identities = 72/194 (37%), Positives = 118/194 (60%), Gaps = 6/194 (3%)
Frame = +1
Query: 109 VFDEKTGKPLPDVLKQHFILEGRIEENAALRIIQDGATLLRSEKTMIEI----DSPVTVC 276
+ +++ K + +K+ F ++ A I++D LL ++I+I D + +C
Sbjct: 156 ILEKQITKEFVEDMKERFCQGKKLPLKFAYSILRDLKELLEKTPSLIDIPVKGDETLVIC 215
Query: 277 GDVHGQFYDLMKLFEVGGSPSCT-KYLFLGDYVDRGYFSIECVLYLWALKLCYPKTLFLL 453
GD HGQ++DL+ +F++ G PS T KYLF GD+VDRG +S E L+A KL YP +F+
Sbjct: 216 GDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRGSWSTEVAFTLYAYKLLYPDAVFIN 275
Query: 454 RGNHECRHLTEYFTFKQECKIKYSEKVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIN 633
RGNHE + + + F+ EC+ KY+E+ ++ + F LPL +L++ +L VHGGL + N
Sbjct: 276 RGNHETDDMNKVYGFEGECRSKYNERTFNIFSETFSLLPLGSLISDSYLVVHGGLFSDDN 335
Query: 634 -SLDDIRKLDRFKE 672
+LD +R +DRF +
Sbjct: 336 VTLDQLRNIDRFSK 349
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 550 DAFDCLPLAALMNQQFLCVHGGLSPE 627
D + C+ + AL + F C HGGL+P+
Sbjct: 646 DPYSCVRILAL--ELFCCSHGGLTPD 669
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 16 NMSGSNDKVSTTQRMIQSVA-FPPSHKLTVSEVFDEKTGKPLPDVLKQHFI 165
++ G V QR++ + +PP + + + D GKPL D +K+ F+
Sbjct: 899 DLDGDEYTVIWDQRLLPKIVNYPPLLESSPKKSIDFLEGKPLIDSVKEFFV 949
>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 64 QSVAF--PPSHKLTVSEVFDEKTGKPLPDVLKQHFILEGRI 180
Q++A+ P + +S +F+EKTGK + V +I +GRI
Sbjct: 259 QTIAYFVTPDPETPLSPLFEEKTGKDIETVTAGEWI-DGRI 298
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 590 WFIRAARGKQSNASMHASYTFSEYLILHSCLKVKYSVKCL 471
WF+RAA K+ +S+ + H + YS+ CL
Sbjct: 507 WFVRAATRKEEREHYKSSFNLCT-SVSHELIHNLYSLMCL 545
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 97 TVSEVFDEKTGKPLPDVLKQHFILEGRIEENAALRIIQDGATLLRSEKTMIEIDSPVTV 273
TV+E+ ++TG+ + V+ E +E A L I+ DG S+ ID P+ V
Sbjct: 129 TVNELLRDETGEVITGVVTSSKKSESPVEYKAPLTIVCDGCF---SKFRKAFIDHPIQV 184
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.4 bits (53), Expect = 9.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 546 HGRIRLLAPGCSYEPTVPLR 605
+G ++LL PGC+Y+ T R
Sbjct: 419 NGTVQLLIPGCTYDNTCSQR 438
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 590 WFIRAARGKQSNASMHASYTFSEYLILHSCLKVKYSVKC-LHSWLPRNRN 444
W IR + + + +SEY I +K++Y V C +HS + R R+
Sbjct: 39 WTIRNMVETAAIRDLSEASVYSEYTIPKLYIKLQYCVSCAIHSRVVRVRS 88
>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 298 YDLMKLFEVGGSPSCTKYLFLGDYVD 375
Y + LF +GG PS KYL +D
Sbjct: 350 YVMEDLFAIGGIPSVLKYLHAEGLID 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,360
Number of Sequences: 5004
Number of extensions: 75946
Number of successful extensions: 239
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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