Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0953
         (811 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)                     28   7.8  
SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.8  
SB_183| Best HMM Match : IBR (HMM E-Value=0.015)                       28   7.8  

>SB_58242| Best HMM Match : PUCC (HMM E-Value=0.14)
          Length = 784

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = -2

Query: 291 YMLYSYP--ILSYIHTRVHTTYIRHYA*YRTRTTPVQLIRDNKIIFHRLLINPTVMVQGI 118
           Y  Y+ P  IL    T VHTT I+H   Y   T P  ++    I  H  +   +++V   
Sbjct: 183 YYRYTAPRSILRVYSTPVHTTSIQHPGPYYQYTAPRSILPVYSIPVHTGIHTQSILVVYC 242

Query: 117 VPI 109
            P+
Sbjct: 243 TPV 245


>SB_6260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 600

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -2

Query: 600 GAALCSLPRLQLSLIYNSAIGSGGEWWPPGLP 505
           GAA+ +LP L L++ Y ++     E+WPP LP
Sbjct: 216 GAAVLNLP-LFLTIYYEASKHFCFEYWPPDLP 246


>SB_183| Best HMM Match : IBR (HMM E-Value=0.015)
          Length = 228

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -3

Query: 506 HQTHFIPVQFVNNYVSNFRMCRTMMRGT*PCAYIFMEYIMYNNMVV*F 363
           H   +I VQF+   V    +CR  ++ T    Y+F  Y+  NN  V F
Sbjct: 98  HNMSWIEVQFLRKAVDVLCLCRNTLKYT----YVFAFYLKRNNQSVIF 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,817,513
Number of Sequences: 59808
Number of extensions: 538349
Number of successful extensions: 1114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)