Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0953
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear horm...    28   6.9  
U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical p...    28   9.1  

>AF024494-13|AAB70328.1|  398|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 260 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 468 IINKLNWYKMCLMATLAATTPLRCRLHYCKLNSTVNVGGYTAPRPRTVRGRHEHPPRSLT 647
           ++NK+ +  +     L + T  RC   YC+    +NVG     RP +++ R    PR L+
Sbjct: 69  VVNKMQYRCLREQKCLISFT-YRCACRYCRFQKCLNVG----MRPNSIQRRDLVGPRKLS 123


>U41264-11|AAA82431.2|  550|Caenorhabditis elegans Hypothetical
           protein F10E7.1 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -2

Query: 237 TYIRHYA*YRTRTTPVQLIRDNKIIFHRLLINPTVMVQGIVPI 109
           T+   +A Y     P+  + DN+II  ++L N +  V  ++P+
Sbjct: 35  TFFTGFAMYLNNFDPINAVFDNEIILDKILNNVSKYVFPLIPL 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,243,764
Number of Sequences: 27780
Number of extensions: 399905
Number of successful extensions: 906
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)