Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0953
         (811 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12260.1 68418.m01441 expressed protein                             30   2.1  
At3g53860.1 68416.m05950 expressed protein several hypothetical ...    29   2.8  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    28   6.4  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    28   6.4  
At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative / aceta...    28   8.4  

>At5g12260.1 68418.m01441 expressed protein 
          Length = 624

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -1

Query: 106 RNYNEISNFTFLNQIPATNRHVSTRRCL 23
           RNYN+ + FTFL ++   NR  S  RCL
Sbjct: 61  RNYNDPAPFTFLIKVLTFNRLHSLSRCL 88


>At3g53860.1 68416.m05950 expressed protein several hypothetical
           proteins -  Arabidopsis thaliana
          Length = 281

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 459 TNIIINKLNWYKMCLMATLAATTPLRCRLHYCKLNSTV 572
           TN+I        +C   TLA+T P+ C +HY K    V
Sbjct: 189 TNVINRSPAGPLLCGKPTLASTVPVLCNVHYQKAQKNV 226


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 590 SAAPPDSSG*TRAPPAIPYPGVRSGPTSLG 679
           S  P   +G   +P ++P+P V  GP +LG
Sbjct: 244 SPVPTPLAGWMSSPSSVPHPAVSGGPIALG 273


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 590 SAAPPDSSG*TRAPPAIPYPGVRSGPTSLG 679
           S  P   +G   +P ++P+P V  GP +LG
Sbjct: 244 SPVPTPLAGWMSSPSSVPHPAVSGGPIALG 273


>At5g36880.1 68418.m04418 acetyl-CoA synthetase, putative /
           acetate-CoA ligase, putative similar to SP|P27550
           (Escherichia coli) and gi:8439651 (Homo sapiens);
           contains Pfam AMP-binding enzyme domain PF00501
          Length = 693

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 201 YAFYTMHNDVCMWCAPSCGYMTR*DNYITY 290
           YAF     DV  WC   CG++T   +Y+TY
Sbjct: 337 YAFDYKSTDV-YWCTADCGWITG-HSYVTY 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,664,080
Number of Sequences: 28952
Number of extensions: 347212
Number of successful extensions: 721
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)