Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0950
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518...    28   2.6  
06_03_0834 - 25206825-25207075,25207326-25207424,25207531-252082...    27   4.6  
06_01_0783 + 5857950-5857979,5859474-5860424                           27   4.6  
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146           27   6.0  
01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267           27   6.0  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    27   8.0  

>08_02_0110 +
           12650328-12650552,12650827-12651423,12651480-12651857,
           12651997-12652218,12652407-12652483,12652553-12652631,
           12652920-12653105
          Length = 587

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 262 TTRPPRSTAKPSTQPKTTPGRRSTLSRPSR 351
           T RPPR    PS  P     R S ++ PSR
Sbjct: 202 TDRPPRIPVSPSRPPVVASPRDSPIASPSR 231


>06_03_0834 -
           25206825-25207075,25207326-25207424,25207531-25208285,
           25209073-25209388,25210472-25210514
          Length = 487

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -1

Query: 353 CLDGLDSVDRLPGVVFGCVDGLAVDLGGLVVIF 255
           CL+ L +   +P VV GC  G   + GGLV  F
Sbjct: 281 CLEQLAAAGDVPDVVIGCTGG-GSNFGGLVFPF 312


>06_01_0783 + 5857950-5857979,5859474-5860424
          Length = 326

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 277 RSTAKPSTQPKTTPGRRSTLSRPSRHS 357
           +++A+P+T P    G+  T S+P +H+
Sbjct: 253 KASARPTTTPGKANGKADTASKPRKHA 279


>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
          Length = 855

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 108 SHGLVAHGVVAHGLAPAAPTISPGD-LHG 191
           SHGL    V   GL  A  +ISPG  LHG
Sbjct: 426 SHGLQCQSVPESGLERARSSISPGTFLHG 454


>01_01_0718 - 5578959-5580761,5583683-5584160,5584239-5584267
          Length = 769

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +3

Query: 108 SHGLVAHGVVAHGLAPAAPTISPGD-LHG 191
           SHGL    V   GL  A  +ISPG  LHG
Sbjct: 426 SHGLQCQSVPESGLERARSSISPGTFLHG 454


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 262 TTRPPRSTAKPSTQPKTTPGRRSTLSR 342
           T + PR  A P  +P  +P RRS  SR
Sbjct: 249 TKQQPRKPASPQRKPAPSPRRRSPPSR 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,454,882
Number of Sequences: 37544
Number of extensions: 59594
Number of successful extensions: 394
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)