Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0950
         (416 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog (hedg...    29   1.4  
U53335-8|AAA96173.1|  606|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    26   9.5  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    26   9.5  

>U41746-9|AAA83334.3|  559|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 6 protein.
          Length = 559

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 271 PPRSTAKPSTQPKTTPGRRSTLSRPS 348
           PPR++ +P TQ  TTP R +T  RP+
Sbjct: 339 PPRTSKRPVTQAPTTP-RATTTRRPT 363


>U53335-8|AAA96173.1|  606|Caenorhabditis elegans Hypothetical
           protein C55C3.1 protein.
          Length = 606

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 335 SVDRLPGVVFGCVDG--LAVDLGGLVVIF 255
           S  R P V+F   +G  ++V LGGLVV+F
Sbjct: 409 SATRAPAVLFSEKNGGTISVSLGGLVVVF 437


>U23484-9|AAC46771.1|  304|Caenorhabditis elegans Hypothetical
           protein EEED8.11 protein.
          Length = 304

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 262 TTRPPRSTAKPSTQPKT 312
           TT+PP+ST+ PST   T
Sbjct: 50  TTKPPKSTSTPSTSTST 66


>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 256  NITTRPPRSTAKPSTQPKTTPGRRSTLSRPSR 351
            N+TT  P +T   ST P+TT     T S+ S+
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSK 1406


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 256  NITTRPPRSTAKPSTQPKTTPGRRSTLSRPSR 351
            N+TT  P +T   ST P+TT     T S+ S+
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSK 1406


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 256  NITTRPPRSTAKPSTQPKTTPGRRSTLSRPSR 351
            N+TT  P +T   ST P+TT     T S+ S+
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSK 1406


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 256  NITTRPPRSTAKPSTQPKTTPGRRSTLSRPSR 351
            N+TT  P +T   ST P+TT     T S+ S+
Sbjct: 1375 NLTTSTPTTTTITSTSPRTTTTTIPTQSQCSK 1406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,037,960
Number of Sequences: 27780
Number of extensions: 39849
Number of successful extensions: 353
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)