Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0949
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    29   0.48 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.7  

>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 147 NGCYYTYKPSSSITLSIKKTHQNPLRSFKDLSIHRDGQ 260
           NG    + PSS+  L    TH+ P+R   DL+++RDG+
Sbjct: 244 NGQVTLWSPSSTTPLVKMLTHRGPVR---DLAVNRDGR 278


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 114 NCNLLLISPLFNGCYYTYKPSSSITLSIKK 203
           NC+++L + L N  + + KP  ++ L   K
Sbjct: 871 NCSVMLFTALINRAFGSKKPKDAVNLGNNK 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,989,321
Number of Sequences: 5004
Number of extensions: 37627
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)