Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0949
         (568 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)                     27   8.1  

>SB_31322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 563

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 147 NGCYYTYKPSSSITLSIKKTHQNPLRSFKDLSIHR 251
           +G Y T+KP     +S  KT+  P + F + SIHR
Sbjct: 228 HGDYRTWKPEPLEKISRSKTYAPPEQPFNETSIHR 262


>SB_28690| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2179

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 117 CNLLLISPLFNGCYYTYKP 173
           CN    +P+++GCYY Y P
Sbjct: 527 CNTPPTNPIYDGCYYHYLP 545


>SB_5677| Best HMM Match : fn3 (HMM E-Value=0.0092)
          Length = 1146

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 120 YSFRSEARAGR*IINKIQNTQQ 55
           Y+ + EARAGR ++  +Q TQQ
Sbjct: 795 YAQQQEARAGRPVVQVVQQTQQ 816


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,117
Number of Sequences: 59808
Number of extensions: 242240
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)