BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= an--0948 (688 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 35 0.013 SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe... 27 2.5 SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 25 7.8 >SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 542 Score = 34.7 bits (76), Expect = 0.013 Identities = 12/49 (24%), Positives = 25/49 (51%) Frame = +1 Query: 418 SWNCKFVHYYDCNLYFYNHKFRQDYTIKNIKKDKQYLIYSQFDHRRQEQ 564 +W C + + +++ FR+ Y + NI+ K +YS +H +Q + Sbjct: 188 NWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236 >SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 422 Score = 27.1 bits (57), Expect = 2.5 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -2 Query: 384 LVTFKTHDNIVCFCSQKYITAYHYNILY 301 L+ F+ H NI C I Y++N +Y Sbjct: 74 LIHFRNHRNITCIYDLDIINPYNFNEVY 101 >SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosaccharomyces pombe|chr 1|||Manual Length = 317 Score = 25.4 bits (53), Expect = 7.8 Identities = 10/36 (27%), Positives = 17/36 (47%) Frame = -1 Query: 622 TPHTMYLRHTRMHTIYCQTFVLDVCGQIENRLNIVC 515 TP + L+ R +C+ + + G +EN VC Sbjct: 206 TPQEVALQDVRKEIDFCRKASIPILGLVENMSGFVC 241 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,434,955 Number of Sequences: 5004 Number of extensions: 45764 Number of successful extensions: 103 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 99 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 103 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 317927284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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