Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0948
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    35   0.013
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   2.5  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    25   7.8  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +1

Query: 418 SWNCKFVHYYDCNLYFYNHKFRQDYTIKNIKKDKQYLIYSQFDHRRQEQ 564
           +W C  +  +  +++     FR+ Y + NI+  K   +YS  +H +Q +
Sbjct: 188 NWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 384 LVTFKTHDNIVCFCSQKYITAYHYNILY 301
           L+ F+ H NI C      I  Y++N +Y
Sbjct: 74  LIHFRNHRNITCIYDLDIINPYNFNEVY 101


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -1

Query: 622 TPHTMYLRHTRMHTIYCQTFVLDVCGQIENRLNIVC 515
           TP  + L+  R    +C+   + + G +EN    VC
Sbjct: 206 TPQEVALQDVRKEIDFCRKASIPILGLVENMSGFVC 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,955
Number of Sequences: 5004
Number of extensions: 45764
Number of successful extensions: 103
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)