Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0948
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54390.1 68414.m06203 PHD finger protein-related contains low...    28   5.0  
At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / he...    27   8.8  

>At1g54390.1 68414.m06203 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 306

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 411 SRISTTAGPLVTFKTHDNIVCFCSQKYITAYHYN 310
           S+ + TA P  +  +H NI+C C +K +  YH N
Sbjct: 274 SKGNGTAPPADSSHSHTNIICTC-EKVLLYYHQN 306


>At4g17750.1 68417.m02650 heat shock factor protein 1 (HSF1) / heat
           shock transcription factor 1 (HSTF1) identical to heat
           shock transcription factor 1 (HSF1) SP:P41151 from
           [Arabidopsis thaliana] ;contains Pfam profile: PF00447
           HSF-type DNA-binding domain
          Length = 495

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 475 KFRQDYTIKNIKKDKQYLIYSQFDHRRQEQKFDNK 579
           KF  +  ++ +K+DK  L+      R+Q+Q  DNK
Sbjct: 178 KFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNK 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,751
Number of Sequences: 28952
Number of extensions: 204541
Number of successful extensions: 359
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)