Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0946
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.2  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    25   7.2  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   7.2  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    25   7.2  
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    25   9.5  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   9.5  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 93   WPSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASS 200
            +PS + N+TQ   T SIW SS  T+ S+    I  +
Sbjct: 913  YPSYS-NTTQGMNTTSIWNSSNSTIVSNVTATITGN 947



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 23/78 (29%), Positives = 38/78 (48%)
 Frame = +3

Query: 99  SLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKLSRPTALN 278
           SLA +ST + T+ S  TSS LT  S+  + +ASS  +       + ++TS  L+  +  +
Sbjct: 90  SLASSSTNSTTSASP-TSSSLTSSSATSSSLASS--STTSSSLASSSITSSSLASSSITS 146

Query: 279 APKRKRVEPKR*LVTSST 332
           +           L +SST
Sbjct: 147 SSLASSSTTSSSLASSST 164


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 149 GPDRQCRICLCTVQGERGPQPSR 81
           GP  +C  C+  ++GE+   PSR
Sbjct: 475 GPQSKCIKCVVDIKGEKKDTPSR 497


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/80 (25%), Positives = 32/80 (40%)
 Frame = +3

Query: 96  PSLALNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLTSRKLSRPTAL 275
           P  + +ST TN++    TS+  T  +S PT  +SS    +       + +S  +  P   
Sbjct: 208 PPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTS 267

Query: 276 NAPKRKRVEPKR*LVTSSTT 335
            +       P     TS TT
Sbjct: 268 TSSTDTNSSPLPTTSTSCTT 287


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 108 LNSTQTNTTLSIWTSSYLTVGSSFPTYIASSKRANVPQKARNLNLT-SRKLSRPTALNAP 284
           L+S  T  TL   +   L       + + +S     P+K R+LN+T S     P ++ AP
Sbjct: 572 LSSQNTFDTLPTISQGLLAATQPVTSVLNTSPLPKTPEKDRSLNVTPSSSTPTPASVLAP 631


>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 218 AEGKELKSHIKEALETNCAKCTKAQKGGTEKM 313
           A G E K       +T CA+C   +KGG  K+
Sbjct: 4   APGDEKKG--ASLFKTRCAQCHTVEKGGANKV 33


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 206 GQCTAEGKELKSHIKE 253
           G+C  EGKEL++ +KE
Sbjct: 315 GECYFEGKELEADVKE 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,332
Number of Sequences: 5004
Number of extensions: 52955
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)